| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2478 |
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| Symbol | |
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| ID | 3960294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2728586 |
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| End bp | 2730343 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637917297 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding protein |
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| Protein accession | YP_523726 |
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| Protein GI | 89901255 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAGCA CATCCATCCG CCACGGCGGT GACCGCGTCG CCGAAGCCCT GCAGGCACAC
GGCGTGCGCT GTGTCTTCAC GCTCTGCGGC GGTCATATTT CTCCCATCCT GAGTGCCTCC
AAAGCGCGTG GCATCCGCAT CCTTGATGTG CGCGACGAAG CCACCGCGGT GTTTGCCGCC
GACGCCACGG CAAGGCTGTC AGGCCTGCCA GGTGTCGCGG CCGTCACGGC GGGGCCAGGC
ATCAGCAACA CCATCACGGC CCTGAAAAAT GCGCAGTTGG CGCAGTCACC GGTGATTCTC
ATCGGTGGCG CTGCGCCCAC CGCACTGCAG GGGCGCGGCG CCCTGCAGGA CATCGACCAG
CGCCCGCTGG TGGCGCCGCA TGTCAAGCGC TTCATCAAGA TTCAACGCGT GTCTGAACTC
GGCCCCGCCG TTGATGAAGC TTTTGCCGTG GCGCAGGCCG GGGTGCCGGG GCCGGTGTTC
ATCGAGTGCC CGGTTGACCT GCTGTACGAC GAGGTCTCGA TTCGCCAGTG GTATGCCGAC
GCGGCGGGCA AAGGCACTTC CGTCGCCGAC CGGTTGTTGC GCTTTTATCT GAATCGCCAC
GTTAAAAAGA TGTTCGATGG CAGCGCGGCG GTGAGCGCGC CGCAGGTGCG CCCCGTGCTG
CCGCCGCGCG CGCCTGATGG CCGCCTGCAG GCGGCGCTGG CAGCGCTGGC CAAGGCCGAG
CGGCCGCTGC TGGTGATCGG CAGTCAGGCG CTGGTGCTCT CAAAACAAGC TGAGCATCTG
GCCGAGGCAG TGGCCAGGCT CGGTATCCCG GTCTATTTGT CCGGCATGGC GCGCGGCTTG
CTGGGGCGCG ACCACCCGCT GCAGATGCGC CACCAGCGTC GCCAGGCTCT GCGCGAAGCC
GATTGCGTGC TGCTGGCGGG CGTGCCCTGC GACTTCCGGC TCGATTACGG CAAACATGTG
CGGCGCAGCG CCACGCTGAT CGCCGCCAAC CGCAGCGCCA AGGATGCGCG CCTGAACCGC
AAGCCCGACA TTGCCGCCAT TGGCGACGCC GGCCTGTTCC TGCAGGCGCT GGCGCAGGCG
CAACCGGCCA GCACCGCAGC CGGGTCACGC CTGGCCGCGT GGGTCGCGCA ACTGCGCGGA
CGTGATGCCG CACGCGAGCT GGAGATCGAC CAGCAGGCTC AGGCCAGCGG TGAGTTCGTC
AACCCGATTG CGCTGTTTCG CACGCTGGAG AACGAGCTGG GCGATAACGC CCTGCTGGTG
GCCGACGGCG GCGACTTCGT GGCCACGGCC TCCTATGTGC TGCACCCGCG TACGCCGCTC
AGTTGGCTCG ACCCCGGCGC TTTCGGCACC CTGGGCGTTG GGGCCGGCTT TGCACTCGGT
GCCGCGCTGG CGCGTCCGGG CGGCGAAGTC TGGATCATCC TGGGTGACGG CGCCTGTGGT
TATGGTCTGG TGGAGTTCGA CACCTTTGTG CGTCACGGTA TCCCGGTGAT CGCGCTGGTT
GGCAACGACG CCGGCTGGAC CCAGATTGCC CGCGAGCAGG TCAAGATGCT GCATGACGAC
GTGGCCACCG TGCTGGCCCG CACCGACTAC CACGCGGTGG CGGCCGGCTT TGGCGCCGAA
GGCATCGTGG TGAAAACCAT GATGGAGCTG CCCGCCGCCC TGGCCCGTGC CCGCGCGCTG
GCGCACAGCG GCAAGCCGGT GCTGGTCAAC GTCTGGCTCG ACAAGACGGA GTTCCGGGAA
GGGTCGCTGT CGATGTAG
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| Protein sequence | MPSTSIRHGG DRVAEALQAH GVRCVFTLCG GHISPILSAS KARGIRILDV RDEATAVFAA
DATARLSGLP GVAAVTAGPG ISNTITALKN AQLAQSPVIL IGGAAPTALQ GRGALQDIDQ
RPLVAPHVKR FIKIQRVSEL GPAVDEAFAV AQAGVPGPVF IECPVDLLYD EVSIRQWYAD
AAGKGTSVAD RLLRFYLNRH VKKMFDGSAA VSAPQVRPVL PPRAPDGRLQ AALAALAKAE
RPLLVIGSQA LVLSKQAEHL AEAVARLGIP VYLSGMARGL LGRDHPLQMR HQRRQALREA
DCVLLAGVPC DFRLDYGKHV RRSATLIAAN RSAKDARLNR KPDIAAIGDA GLFLQALAQA
QPASTAAGSR LAAWVAQLRG RDAARELEID QQAQASGEFV NPIALFRTLE NELGDNALLV
ADGGDFVATA SYVLHPRTPL SWLDPGAFGT LGVGAGFALG AALARPGGEV WIILGDGACG
YGLVEFDTFV RHGIPVIALV GNDAGWTQIA REQVKMLHDD VATVLARTDY HAVAAGFGAE
GIVVKTMMEL PAALARARAL AHSGKPVLVN VWLDKTEFRE GSLSM
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