| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2350 |
|---|
| Symbol | |
|---|
| ID | 3961485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2583144 |
|---|
| End bp | 2584691 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637917167 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_523598 |
|---|
| Protein GI | 89901127 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG4564] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTAT CGAATTCACT TCTTCGTCCC GGGGTGGCTT TGTTGCAGCG CTTGAGTCTG
CGTGTGCGGC TGTGGCTGAT GGCTTTGTTG CTGCTGCTGC CCTTGCTGAT CTTGGGTCTG
CTGTTGGGTT ATCAGTCTTA TGCGCAGCAG TCTGGCGTCA GCCTTGCCAT GGTTCTTGGG
TTGCTGGGAT TTCTTTTGGT GCTTTACTTG TCTGCGGCTT TTTATCAAAG CCTCACGCTG
GCTGTGGACG TCCTGACGTG CGTCGTGCGC AGCAGCGCAC GAGGCGACCT GTCGCACAGC
GTGGTGGTGC CGGGGCACGA TGAGTTGTCG CAAGCGGGTC GCCATCTCGA ATCCATGAGC
GAGAACTTTT CTGGTTTGGT CGGCACCATT CGCAACCAGG CCGTACATGT GGCGCAGGCG
GGTGAATTGC TGGCGAGCGG CATGGGGGAT CTTTCGCAGC GCACTGAGGC GCAGGCTGCC
AGCCTGGAGC AGGCCAGTGC CAGCATTCTT GGCTTGAATG AGTCGGCACA GGCCACGGCG
CGGCATTCCA AGGAGGTGGA TGCCCTGACC CGGCGCGTGC GCGACGAGGC CGAAGCCGGC
GCGCAGGCGA TGGATGTGGC GGTGCACGCC ATTGGCGAGA TTCAGGACGG ATCCAAGCGT
ATGGGCGAGA TCATTGGGGT GATTGATGGC ATCGCCTTCC AGACCAATAT CCTGGCACTC
AATGCGGCTG TGGAAGCCGC GCGCGCCGGT GACTTGGGGC GTGGTTTTGC CGTGGTGGCA
AGCGAGGTGC GCACACTGGC GCAGCGCAGT GCCACCTCGG CGCGCGAAAT ACGCGCCCTG
ATTGCGCGCT CGGGTGATCA GGTCAGCGTA GGTGTCACCC GCATCGAGGC TGTCACCGGC
AGCCTGCGTA CCGTGGTCAG GGGCATTCAA GAGGTGGCTG AAGGTCTGGA TGGCATCACA
GCGGCCAGCA ACGAGCAAAG CACAGCCCTG TCTGAGATTG CGCAGGCGGT CAAGGAACTT
GACAACATCA CACAGCGCAA CGGGGCCATG GTGGACCAGG CCTTGCAGGC AACGGTTGGC
TTGCGTGACC GGGCCTCTAA TCTCAGCGAA GCGGTTGCGG CCATCAAACT GCGTCGCGGC
ACTGCGGATG AAGCCCATGC GCTGGTCAAG CGAGGCTTTG ATCTGATCAG CCAGATTGGC
CTTTCAAACG CTGCCGCGCG CTTTCATGAC CCGCACGGTG GTTTTCGCGA TCGGGACTTG
TACCTCTTTG CATTCGACCG CCGGGGCGTT TATCAGGTGT TTGGGTCCAC GCCGGACCGG
GTGGGCAAGA CGGTGTATGA CGTCCGGGGA CTCGACGGCG ATCATATTTT GCGCGAAGGC
TTTGACGCCG CTGAGCGTGG CGGTGACTGG ATTGACTACG AGGTGGTGAA TCCGGTGACC
GGCATGGTGG ATGAGAAAAC CTCTTATATC CTGCCCTTGC CAGATGGACG ACTGCTTGGT
TGCGGCGTCT TTAAGCCCAA GGGCGGATTT AGCCTTCAGG TCTCGTAG
|
|---|
| Protein sequence | MSLSNSLLRP GVALLQRLSL RVRLWLMALL LLLPLLILGL LLGYQSYAQQ SGVSLAMVLG
LLGFLLVLYL SAAFYQSLTL AVDVLTCVVR SSARGDLSHS VVVPGHDELS QAGRHLESMS
ENFSGLVGTI RNQAVHVAQA GELLASGMGD LSQRTEAQAA SLEQASASIL GLNESAQATA
RHSKEVDALT RRVRDEAEAG AQAMDVAVHA IGEIQDGSKR MGEIIGVIDG IAFQTNILAL
NAAVEAARAG DLGRGFAVVA SEVRTLAQRS ATSAREIRAL IARSGDQVSV GVTRIEAVTG
SLRTVVRGIQ EVAEGLDGIT AASNEQSTAL SEIAQAVKEL DNITQRNGAM VDQALQATVG
LRDRASNLSE AVAAIKLRRG TADEAHALVK RGFDLISQIG LSNAAARFHD PHGGFRDRDL
YLFAFDRRGV YQVFGSTPDR VGKTVYDVRG LDGDHILREG FDAAERGGDW IDYEVVNPVT
GMVDEKTSYI LPLPDGRLLG CGVFKPKGGF SLQVS
|
|---|
| |