| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2294 |
|---|
| Symbol | |
|---|
| ID | 3964096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2517257 |
|---|
| End bp | 2518465 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637917111 |
|---|
| Product | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes |
|---|
| Protein accession | YP_523543 |
|---|
| Protein GI | 89901072 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.732113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACC TCACCACCAC GCTGATTCAT CACCCGTATG TTCCTCCGGC AGGCTTCGCC
GCGCCGCAGC CGGGCGTGTT CAAGGCCTCA ACGGTGATCT TTCCCAATGT GGCGGCCATG
CGCAACTTTG AGTGGAAGGA CAAGACCGCC TACACCTATG GTCTGCATGG CACGCCTACC
ACGTACATGC TCGAAGAGCG TTTGTGCACG TTAGAGGGCG GCCTGCAGTG CCTGCTGCTG
CCCAGTGGGC TGGCGGCCAT TGCCAACGTG GCCTTGTCGC TGCTGCGCAC CGGTGACGAG
GTGCTGCTGC CAGACAACGC CTATGGTCCC AACAAGGTGC TGGCCGAGGG CGAACTCAAA
GCCTGGGGCA TCACCCACCA AACCTACGAT CCGATGAATC CGCAGGACCT GGCGGCCAAA
ATCGGTCCGC GCACGCGTCT GGTGTGGCTG GAGGCGGCCG GCTCCGTCAC GTTGGAGTTT
CCCGATCTGC GCGAGCTGGT GCGCGTGTGC CAGGCGCGTG GTGTGCTGAC GGCCCTGGAC
AACACCTGGG GCGCCGGTCT GGCCTTTGCG CCGTTTGACC TGACGCCCGG CGCCAGTCCG
GCCCTCGGTG TTGACATCTC GGTGCATGCG CTGACCAAGT ACCCCAGCGG TGGTGGCGAT
GTGCTGATGG GCAGCGTCAT CACCCGTGAC GCCTCGCTGC ACATGAAGCT CAAGCTGACC
CATATGCGCC TGGGGCTGGG CGTGGGGGCC AACGATGCCG AAGCCGTGTT GCGGGCGCTG
CCCAGCATGG CGCTGCGCTA CCGGGCGCAC GACGAGACAG CACGCATACT GGCCCGCTGG
TGCGAGGCCC GCGCCGAATT TGTTCAAGTT CTTCATCCGG CGTTGATCGA TTCGCCTGGG
CATGGGCATT GGCTCACGCT GTGTCAGACT GAATCCGGTG GTGCAGCGGG CCTGTTCAGC
GTGATTTTTG ACGAGAAGTT CAACCAGGAC CAGATTGATG CATTTTGCAA CGCGCTCAAG
CTGTTCCGGC TGGGTTACAG CTGGGGCGGG CCCATGAGTC TGGTCATGCC TTATGAGCTG
GCCTCCATGC GTAGCACCTG GCCGGTCTAC CTGAGGCAAG GCACGCTGGT GCGCTTTTCG
GTCGGTCTGG AGGCGGTAGC GGATTTGCAG GCCGATCTTC AGCAGGCCTT GCAGGCAAGC
CTGGCTTGA
|
|---|
| Protein sequence | MADLTTTLIH HPYVPPAGFA APQPGVFKAS TVIFPNVAAM RNFEWKDKTA YTYGLHGTPT
TYMLEERLCT LEGGLQCLLL PSGLAAIANV ALSLLRTGDE VLLPDNAYGP NKVLAEGELK
AWGITHQTYD PMNPQDLAAK IGPRTRLVWL EAAGSVTLEF PDLRELVRVC QARGVLTALD
NTWGAGLAFA PFDLTPGASP ALGVDISVHA LTKYPSGGGD VLMGSVITRD ASLHMKLKLT
HMRLGLGVGA NDAEAVLRAL PSMALRYRAH DETARILARW CEARAEFVQV LHPALIDSPG
HGHWLTLCQT ESGGAAGLFS VIFDEKFNQD QIDAFCNALK LFRLGYSWGG PMSLVMPYEL
ASMRSTWPVY LRQGTLVRFS VGLEAVADLQ ADLQQALQAS LA
|
|---|
| |