| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2271 |
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| Symbol | |
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| ID | 3960826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2490864 |
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| End bp | 2492894 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637917092 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_523524 |
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| Protein GI | 89901053 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCATCTG AACCTCCCAG CAAGACATCA CCAGCCGACC GCCAACAGGA GTTTCTTCAG
GCCGGGCTGG ATCGAATTGA CCAGGGCTTG ACGGTTATTG ATGGCAACCT GCAACTGGTG
GCGTGGAACA GGGCCTTTTT GCGGTTGCTG GATTTTCCCG AAGACATGGC GTATGTCGGC
GCGACCTTTG AGTCGTTCAT ACGCTACAAC GCCGAACGCG GCGAATACGG GCCGGGCGAT
GTGCAGGAAC TGATTGCCGA GCGCGTGCGG TTGGCAAGTC GTTTTGTCTC GCACTACACC
GAGCGTGTCC GGCCGGACGG CCGGATTCTG GCGGTACGTG GCGACCCCTT GCCCGACAAC
GGCTTTGTGA CGCTTTACAC CGACATGACC GCCAGCCGAC GTCTTGAGCA ACAGATCCAG
CAGGACAACG CAGAGTTGGA GGATCGCGTC ATCCAGCGCA CCGCCCAATT GACGGCAGCC
CAGCAGCGCC TGACCGAGGC GGATGCGGCC GCGCAGCGCA TCACCACCGC CTTGCGCTGC
AGTGAAGAGA ATTTGCGCTT GATCACAGAT ACGGTGCCCG CGCTGATTGG CTACTTTGAC
CAACAGGAAA TCTACAGCTA CACCAACAAA GGCTATTCCG ACTGGTTTGG GTTCACCAAG
GAGGAAATGG TGGGCCGTTC GATTCATGAC GTGGTTGGAG ACGAGGTTTA CGCCAGTGTC
TCGACGTATT TGCACCTGGC ACTGAGAGGG CAGCAGGTGA GCTATGAGTA CGCCATGCGC
CGCCCGGGTG GGCAGGTGTT CTATGCGCGC AGCGAATTGG TCCCGGAAAT GGACGCCGAG
GGTCGCGTGA TCGGCTGTTT TGTTCTCTCA GTCAACATCA CCGATCTCAA GAATGCGCAG
TCGGCTCTAG TTCATGCACA AAAGATGGAG GCGGTGGGAC AGTTGACAGG CGGGCTTGCG
CACGACTTTA ATAATTTGCT GACGGTCGTG ATCGGCAATC TGCTGACCCT GCATGAGCGC
TACCCCAACG ATCCGGATAT TTGCGAATTT GTGGTGCCGG CGCTGAAGGC GTCGCGCCGG
GGTGCGGCGT TGATCAAGCG CCTGCTGGCG TTCGCATCAA AGCAGCCGCT GGCGCCGAGG
TCCGTCAATA TTGAAGACCT GGTGGCCGAC ACCATGATCC TGCTCAAGCG CACGCTGCCG
GCGCATATCA GCGTGACCAG CATTCCCATG GATGAGCCCT TGTTCGCGAT GACCGATGCG
CAGCAGCTTG AAAACGCACT GCTCAACCTC GCGCTCAATT CGCGTGACGC CATGCCCGAT
GGTGGGCAAC TGGTGATTCA GGCGCAGCGC ATGCAGTTGG ACCTGGCGCA CGTGGCTGAT
TTCGACGTTG CACCGGGCTG CTACGTAGCT TTGAGTGTTT CCGACACCGG CGCCGGCATG
GATGCCGCCA CGCAGGCCCG CGCCTCGGAT CCGTTCTTCA CCACCAAACG CTTTGGTTTG
GGAAGTGGTT TGGGCTTGTC CATGGTCTAT GGATTTGCCA AACAATCTGG TGGCGGTATT
CGCATTCAAA GCGCATTAGG CGAAGGCTGC ACTGTCACGC TGGTGCTGCC GTATGTCTGT
GACAAGCTCG AGCTTGACGC GCCGATGGGC GCGCAGTATG GCTCGGGTCA ACGCGGCGCG
GAGCACCCCC TGGTCTTGCT GGTGGAGGAC GACCCCGACG TGCGCCGTGT CATCCGGCTA
CAACTCGTCG ATCTGGGCTA CCCGGTAATC GAAGCGGACC ATGCGGCTGA TGCCCTGGAT
CTATTGTCGA CCGTTCCATC CGTGGGCATA CTGATCTCCG ACATGGTGAT GCCCGGCAGC
ATGGATGGAC GCACGCTATG CTGTGAGGCG AGCCTGAGTG CACCGAATGT GAAGACCTTG
TTGATCAGCG GCTACGCCAT GTCGCCCGAG AATGCGATCG GTCCACCGCT GTTGAAGAAG
CCATTCACCG CCGTCGAACT GCAACGGGCC CTTGATGGTT TGATGTCATG A
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| Protein sequence | MPSEPPSKTS PADRQQEFLQ AGLDRIDQGL TVIDGNLQLV AWNRAFLRLL DFPEDMAYVG
ATFESFIRYN AERGEYGPGD VQELIAERVR LASRFVSHYT ERVRPDGRIL AVRGDPLPDN
GFVTLYTDMT ASRRLEQQIQ QDNAELEDRV IQRTAQLTAA QQRLTEADAA AQRITTALRC
SEENLRLITD TVPALIGYFD QQEIYSYTNK GYSDWFGFTK EEMVGRSIHD VVGDEVYASV
STYLHLALRG QQVSYEYAMR RPGGQVFYAR SELVPEMDAE GRVIGCFVLS VNITDLKNAQ
SALVHAQKME AVGQLTGGLA HDFNNLLTVV IGNLLTLHER YPNDPDICEF VVPALKASRR
GAALIKRLLA FASKQPLAPR SVNIEDLVAD TMILLKRTLP AHISVTSIPM DEPLFAMTDA
QQLENALLNL ALNSRDAMPD GGQLVIQAQR MQLDLAHVAD FDVAPGCYVA LSVSDTGAGM
DAATQARASD PFFTTKRFGL GSGLGLSMVY GFAKQSGGGI RIQSALGEGC TVTLVLPYVC
DKLELDAPMG AQYGSGQRGA EHPLVLLVED DPDVRRVIRL QLVDLGYPVI EADHAADALD
LLSTVPSVGI LISDMVMPGS MDGRTLCCEA SLSAPNVKTL LISGYAMSPE NAIGPPLLKK
PFTAVELQRA LDGLMS
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