Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2227 |
Symbol | |
ID | 3961958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2442088 |
End bp | 2445135 |
Gene Length | 3048 bp |
Protein Length | 1015 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637917047 |
Product | XRE family transcriptional regulator |
Protein accession | YP_523481 |
Protein GI | 89901010 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGAGC AGAGCAATTC TTTCGGATAC TGGCTGCGAC GGCGGCGCAA GGCGCTTGAT CTGACCCAGG ATGCGCTGGC CAAAAAAGCC TGTTGTTCGC TGGCCGCCAT CAAGAAGATC GAAGCCGAGG AGCGTCGACC TTCGCGAGGA CTGGCGCAAC GCCTGGCCGA GCAACTCGCG ATTCCCGCCC AGGACCGGGC AGCGTTTTTG CAGGCTTCCC GCAACCTGCA AGCGCCCAAG CGCATGCCGC TTGATGAGTT GCCCATCGAA GCAATGCGCA CCGCTGCCGC GAGCGACGGA CTCGGGACTG TCGGCGATCA GCTCGCCCAT GCCGGCGAAC AAAAATTCCC CTTCGTCGGG CGCAACAAGG AGTACGGGCA GTTCATCGGT CTGATCGCCC GACTCACCGC GGGCAGCGGC CAGGTGGTAC AGATCGAAGG TGAGGCGGGC ATCGGCAAGA GCCGACTCAT GGCTGAGGTC GCGTGTTATG CCCGCCAGCG GGCGTTGCCG GTGCTGGCCA CCAATTGCTA CGAGATCGAG CGCGCGATAG CGTATCAACC AGTGATCGAT CTCGCCACCC AAGCGTGCGA CGCAGCACCC GAGGCCCGGC TGCGTTTGAT CGCGCCGATC CTGCTGGCCG AGATCGCCGC GCTGGTGCCG GCCATGGCGG CCCGTCTGCT TGACCTGCCA TCCTTGTCGG CGGACTTTCC CGAGGCGCGC CAGGCGCGCC TGTTTCATGC GCTGGTACAA CTCTTCGACG CGCTGGCGCA GGACCGGCAG TTGATTGTCA TGATGGATGA CATCCAATGG GCGGACGACG CCAGCCTGCG ATTCCTGCAT TTTTTCGCGC GCCAGATTGC GAGCCGGCCG GTGCTCCTGG CCTGTGCCTA TCGGGACGAG GAACTGGGCA GCAACGAACA CCTCACTGGC CTGCTTGAGA GCCTGCGCCG TGAACCCTAC ACGCGGCACA TGGCGCTGGC ACGGTTCGGA CCCGGCGATA CGCAAGCGCT GCTCAACGCA ATGAACGACC CCAAACTGAG CGCGCCTGAT CTCGCCGCCC GGCTGCACCG TGAAACGGAC GGCAATCCAT TTTTCCTCTG CTCGATCATG CACTCGCTGA GTGAAGATGA AGGCATGATC GGCGACGCGC TCAGCCTGCC GCTGCCGCAC GCCCTGCGTG ACTCGGTGCG GGCGCGTCTG GCCCGCGTGC CGCAGGAAGA CCGGCTGCTG CTGGATGTGG CAGCCGTGCT CGGGCGCCGT TTTGACTTCG AGACCCTGCT CACGCTCGCT AGGGTGCCCG AAGAGCGCTT TTTGCACAGC CTGGATGCGC TGGTGAAGCG CCGGCTGCTG CGAGAGGAGC AGGACGGCGA ATTCTATGAT TTCAGTCACG ACAAGGTGCG AGAGGTGGTG TACCGGGATA TCGGCATGGC CGGGCGCGTG CTGCTGCACC GGGCGGTGGC GGAGATGCTG GAGCAGCATG CTGAAAGTGA AACGCATGAG CGCCATGCCC ATCTTGCCGA GCACTATGAG CGCGGCAAGA TGTGGCCCAA GGCGCTGCTT TATTTGGGTC TGGCCGCCGC GCACTCGCAA AAATTATTTG CAATGCGAGA AGCGCTGAAA TGGTTTGACC GCGCCGTCGT GTTACTGCAA GCCCATCCCG AAGCGGCAAC GCAAGCCCAA CAACTCGCCT TGTACGAGCA GCGTGGCGCG GCGCGGGCGC AGGCAGGCCA GATCGAGGGC GCGGTGGCCG ATTTTCAACG GGTGATCGAT GCCGCGCGCG CGTTGGGTGA GCACGGGCAT GCGCGTGATG TATTGATTCA GCTCGGCATG GCTTATCGAC GCGCCGACGC CTACCAGCAG GCCATTGTCT GCTTGGACGA GGCGCTCACG GCGTCGCTGG CCATGGGCGA TGAACGCCAT GCGGCCGATA CCTTGTATCA CCTGGGAACG GTGGCCTGGA GCAACGGTCG CAACGATCTG GCGATCACCT ACCACCAACA AGCGGTGGCG ATCTGCGAGC GCCTGGGCCT GACTGACCTG GTCGCCGTGC AGGCCTTCCA CGGCCGAGGG GAAGCCTATT TCGCCAATGC CGAACCGGCG GCGGCCATCG TTTCTTTTTC CCGTTCTCTC GACCTTGCAC GCGGCATCGG CGACAAGAGC TATGAATCGG AAAACCTGAT GATGATCGGC TGGGCCTGCA GCGGTCATAT GGGGCTGGCC GACTACCCAC GCGCCTTGTC ACACTTCGAC GCCGCCCTCG TCATCGCGCG CGCCGCCGAC CTGCAATGGC ATATCGGCCC GACCCTGATC GGACGCGCCA ACGTGCAGGT GGCGCTCGGC CGATTTGGCC AGGCATGGCA TGATTTGAAC GAGGCCCTGC CCCGCCTTGA AACACTGGGG TTGGTTCGGT ACCAGATCAT GGCGCATGAC GCGCTGGGCG GCCTGTTTCT GGACCTGAAT CAGCCCGGGC AGGCGCTGCG GCACTTTGAA CAGGGGCTGT CGCTCGCGCG CGACGCCGGC ATCAAGTTCT GGCAGCCCAG GCTGCAAGCC GGTCTGGTGA TTGCACAACT GCGCCTTGGT GTGCCAACTG ATCGGGCAGC ATTACTGGCG GCTCAGCAGT ACACGCAGGA TCACAGTGAA ACCTGGCTGA CGCTACGCTG CCTGGAGGCG CTCGCCGAGT TGGCGCTGGC CAGAGGCGAC GCCGACGGGT GCGTCACGCA GGCGGACCAG TTGCTGGCGC TGGCCTCGCG CGGCGACTTG CGGGAGCTGA TCGGACAAGC CCATCGCTTG CGCGGCCTGG CCTGGCTCCA TGGCAAGGCA TACGAATCTG CGCGCGATGA GCTGACGCTG GCCGCAACGC TGGCCGAGCA GATCGGGTGC GTCCGGCTCG CGTGGGAGTG TCACTGCGCG CTCGCTCGCG TTGCCGCTGC GCTCGGCGAC GGCAGCGGCG AAAACACCCA GCGAGCCGGC GCACGCGTGC TGGCTGCACA AGTTGCCGAG AATCTGCGTG GCTCGGGTCT GATTTCCAAT TTGGAGGCAG ATCCGTGA
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Protein sequence | MIEQSNSFGY WLRRRRKALD LTQDALAKKA CCSLAAIKKI EAEERRPSRG LAQRLAEQLA IPAQDRAAFL QASRNLQAPK RMPLDELPIE AMRTAAASDG LGTVGDQLAH AGEQKFPFVG RNKEYGQFIG LIARLTAGSG QVVQIEGEAG IGKSRLMAEV ACYARQRALP VLATNCYEIE RAIAYQPVID LATQACDAAP EARLRLIAPI LLAEIAALVP AMAARLLDLP SLSADFPEAR QARLFHALVQ LFDALAQDRQ LIVMMDDIQW ADDASLRFLH FFARQIASRP VLLACAYRDE ELGSNEHLTG LLESLRREPY TRHMALARFG PGDTQALLNA MNDPKLSAPD LAARLHRETD GNPFFLCSIM HSLSEDEGMI GDALSLPLPH ALRDSVRARL ARVPQEDRLL LDVAAVLGRR FDFETLLTLA RVPEERFLHS LDALVKRRLL REEQDGEFYD FSHDKVREVV YRDIGMAGRV LLHRAVAEML EQHAESETHE RHAHLAEHYE RGKMWPKALL YLGLAAAHSQ KLFAMREALK WFDRAVVLLQ AHPEAATQAQ QLALYEQRGA ARAQAGQIEG AVADFQRVID AARALGEHGH ARDVLIQLGM AYRRADAYQQ AIVCLDEALT ASLAMGDERH AADTLYHLGT VAWSNGRNDL AITYHQQAVA ICERLGLTDL VAVQAFHGRG EAYFANAEPA AAIVSFSRSL DLARGIGDKS YESENLMMIG WACSGHMGLA DYPRALSHFD AALVIARAAD LQWHIGPTLI GRANVQVALG RFGQAWHDLN EALPRLETLG LVRYQIMAHD ALGGLFLDLN QPGQALRHFE QGLSLARDAG IKFWQPRLQA GLVIAQLRLG VPTDRAALLA AQQYTQDHSE TWLTLRCLEA LAELALARGD ADGCVTQADQ LLALASRGDL RELIGQAHRL RGLAWLHGKA YESARDELTL AATLAEQIGC VRLAWECHCA LARVAAALGD GSGENTQRAG ARVLAAQVAE NLRGSGLISN LEADP
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