| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2155 |
|---|
| Symbol | |
|---|
| ID | 3961206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2339030 |
|---|
| End bp | 2340070 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637916975 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_523410 |
|---|
| Protein GI | 89900939 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1877] Trehalose-6-phosphatase |
|---|
| TIGRFAM ID | [TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.555356 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCA AAAATCCAAG CTCTGAACAA CTTGACGTGA AACCGGCCCG CAGCGTGGTG
GTGGAAGAAG CGCTTGCCGG TGTGCAGGCG GGCCGACGTG CCGGGTTTGG CATGGTCGTC
GGCGTGGACC GTAGCGGCCA TGCACAGGAA CTGAAAGACG CCGGCGCGCA CATGGTGGTG
ACTGATCTGG TGGAGGTCAG CGTAGCGCAG GAAGTCGCAC CTGCCCGACG TCGCAGTGAC
GAACTTCCTT CCGCTCTGGC GGCGCTCGCA GACATCAAAG CCCGTATGAA AGGCAGAAGC
CCTGCGGTTT TTCTTGACTA TGACGGCACG TTGACGCCGA TTGTGCAAAG CCCCGAGCTG
GCACTGCTGT CGGACGACAT GCGTGATGCG GTGCGCACAC TGGCCCGGCG CTGCACGGTG
GTCGTGATGA GTGGCCGGGA TCTGCCCGAT GTGCAGGCAA GGGTGGGTTT GAAAGACATT
GTTTATGGTG GCAGCCATGG CTTTGAAATC TTCGGCCCCC AGGGCATGCA CTTCGAGCAG
GAGCAGGGCG GCGAATTTCT GCCCCAGCTC GACCGGGCCG AGCTGGCGCT GCGGGAGCGA
CTTGGGCACG TTCCCGGCCT TCTGGTCGAG CGCAAGAAAT ACGCCATCGC AGTCCATTTT
CGCCTCGTGG GGGAGTCTGA CCTGGAGGCC GTGGAGCCCG CTGTGAATGC GGTGCTTGCA
GCACATCCGA AACTGCGCAA AACCCACGGC AAGATGATTT TTGAAGTGCA GCCGGATATC
GACTGGGACA AGGGCCGGGC CATGATCTGG CTGCTCGGAA AGCTCGGCCT GGCGCAATCC
GATGTATTCG TGCTTTATCT TGGGGACGAC ATCACCGACG AGGATGCATT CAGGTCGCTG
AACGCGCAAG GCAACGGCAT CGGCATCCTG GTGCGCGACG AGCCCCGCGA CACCGCGGCG
CAGTATGCCC TGGGCAGCAT TGAGGAAGTT CGACGTTTTC TGACTGAACT TGCCACCCTG
ACAGAGGGGA CAAGGGCATG A
|
|---|
| Protein sequence | MNAKNPSSEQ LDVKPARSVV VEEALAGVQA GRRAGFGMVV GVDRSGHAQE LKDAGAHMVV
TDLVEVSVAQ EVAPARRRSD ELPSALAALA DIKARMKGRS PAVFLDYDGT LTPIVQSPEL
ALLSDDMRDA VRTLARRCTV VVMSGRDLPD VQARVGLKDI VYGGSHGFEI FGPQGMHFEQ
EQGGEFLPQL DRAELALRER LGHVPGLLVE RKKYAIAVHF RLVGESDLEA VEPAVNAVLA
AHPKLRKTHG KMIFEVQPDI DWDKGRAMIW LLGKLGLAQS DVFVLYLGDD ITDEDAFRSL
NAQGNGIGIL VRDEPRDTAA QYALGSIEEV RRFLTELATL TEGTRA
|
|---|
| |