| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2139 |
|---|
| Symbol | |
|---|
| ID | 3962091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2320846 |
|---|
| End bp | 2321988 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637916959 |
|---|
| Product | 3-hydroxyisobutyryl-CoA hydrolase |
|---|
| Protein accession | YP_523394 |
|---|
| Protein GI | 89900923 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000311215 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACG CTGGACTGAA TGTACAAAAC CCTGCAGCAA GCGATGAGGC AGCCCTTGTG
CTGAGCGAGG TACGCGGCCA GGTTGGCTTC ATCACGCTGA ATCGGCCCAA AGCCCTGAAC
GCCTTGTCGC TGCCCATGAT CCGCGCCTTG ACCCAATGCC TGCTGGCTTG GCGCGGTGAC
GCTCGGGTCA AGGCGGTGGC CATTCGCGGC AACAGCAAAA CCGGCCCTTT TGGCGCCTTT
TGCGCCGGTG GTGACATCCG TTTTTTTCAT CAGGCTGCGC TGGCGGGTGA TCCTGAGCTG
GAAGACTTCT TCACCGAGGA ATACAGGCTC AATCATTTGA TCCACACCTA CCCCAAGCCC
TCAATGGCCT TCATGGATGG CATTGTCATG GGCGGTGGCA TGGGCATTGG TCAGGGCACC
AAGATCCGCA TCGTCACGGA ACGTACCAAA ATGGCCATGC CGGAAACCAA CATTGGCTTG
TTCCCGGATG TGGGTGGTGG CTATTTTCTG AGCCGCTGCC CGGGGCATAC CGGCGAATGG
TTGGCCTTGA CCGGGGAAAC CCTTGGCGCC GCCGCGGCGC TGACGCTGGG TCTGGCCGAT
GTCTGTTTTG ACGCCACCCA GTTGTCGTCA GCTTGGGAAG CTTTGGCCCA GCTGGACTTT
GATCGCGATA CAGCCATCGA TTCCTGGACT GCTATGTATT CAATAGCTGA TGCCGCTTAT
TCCATGGGGG CTAGAGGCCA AATTGATCAA TATTTTGGAC TGGACTCTGT GGTCGCCATG
GTGCAGGCGC TGGAGGCTGC TGACGACGAG TGGTCGCAAC GCACTGCCGC CACTTTGCGC
CAGCGCTCAC CGGTGATGTT GCAAGTGACG CTGGAACAGA TTCGCCGCGC CCGCTCCTTG
AGCCTGGCTG ATGACCTGCG CATGGAGCGC GACATGGTGC ACCACTGTTT TGCCCCCCGG
CATCTGGGGC GCAGCGCCAA CCAGAGCGAG ACGGTCGAAG GCATCCGGGC GTTGGCTGTG
GACAAAGACA ACACGCCGCA CTGGAACCCG GTCCGAATTG AAGACGTGAC CCCGGCGATG
GTGGCGCCAT TTTTCACCAG CCCGTGGACG CCTCAGGCCC ACCCGTTGCG TGAGTTGAGA
TAG
|
|---|
| Protein sequence | MTNAGLNVQN PAASDEAALV LSEVRGQVGF ITLNRPKALN ALSLPMIRAL TQCLLAWRGD
ARVKAVAIRG NSKTGPFGAF CAGGDIRFFH QAALAGDPEL EDFFTEEYRL NHLIHTYPKP
SMAFMDGIVM GGGMGIGQGT KIRIVTERTK MAMPETNIGL FPDVGGGYFL SRCPGHTGEW
LALTGETLGA AAALTLGLAD VCFDATQLSS AWEALAQLDF DRDTAIDSWT AMYSIADAAY
SMGARGQIDQ YFGLDSVVAM VQALEAADDE WSQRTAATLR QRSPVMLQVT LEQIRRARSL
SLADDLRMER DMVHHCFAPR HLGRSANQSE TVEGIRALAV DKDNTPHWNP VRIEDVTPAM
VAPFFTSPWT PQAHPLRELR
|
|---|
| |