| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2062 |
|---|
| Symbol | |
|---|
| ID | 3962109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2232731 |
|---|
| End bp | 2234134 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637916882 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_523318 |
|---|
| Protein GI | 89900847 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACAC AGCAACTGCG CCACGGCTTC GCTCTGTTGC TGGCGCTCCT TCTGACTGCC
TGCTCCAGCG TGCGTCCATG GCAAAACCTG CCTTTGCCGC CCGATGTGGC GCTGCCCGCC
GCGAGCAGCT TGGCCCCGGA CGTGGGACCT CCAGTCAAGC AAGACAGCTC CATGCTGTTC
GCCATCACCA TCTCGGGCGG CGGTGCGCGC GCAGCCGCGT TTGGCTACGG CGTGCTGGAT
GCGCTGAGGC AAACCCAGGT GCATTGGAAT GGCCGCGACA TAGCGCTGCT TGACGAGCTG
GACGTGATTA GCGGGGTATC GGGCGGAAGC TTCATCGCTG CCTACTACGC TGCTTTTGGC
CAGCGAACTT TCCCCGCCTT TGAAAAGGAT TTTCTGTACC AGAACTTCCA GGACACCTTG
ATCAGCAACG TGCTGCGCCC GGCCGCCCTG TACGAATTGT CCTCGCCCTG GTTTGGCCGC
ACGCAATTGC TCGCGCGTCG GCTAGATGAA CTTTTCAAAG GCAAAACCTT CGGCGACCTG
GCCGCCCGCC CCGGCCTGTT GATCTCGGCC ACGGACCTGT CACTGGGCTC CAGCTTTGTA
TTCAGTCAGG AGCAGTTCGA GCTGATCTGC TCGGATCTGG CCAGTGTGCC GCTGTCGTTC
GCAGTGGCCT CATCGTCGGC CGTGCCCATT GCACTCAGCC CTACAACACT CAAAAACCAC
AATGACGTTT GCCCACGCCC GCCAAACAGC CTCAACGGTG CAGCACCTAC CGATTACCGC
GTGCGCTTGC TGCGGGACAG CCAGCGCTCC TACCTGGACG CGAAGACGCG GCCGTACATC
CACTTGGTAG ATGGTGGCCT GGCTGACAAC CTGGGACTGC GCACCTTGCT GGAGCAATCG
TTGGCCGCCG GCGGTATCCG CAACGCCGCG CGTCGCACAT CAAAAAATGC CATTCAAAAG
CTCGTGATCA TTGCCATCAA TGCCGAGCGT GACCCGTCCG AGCGCATTGA CGCCAGCGAC
AAGGTGCCTG ACACCTTACA AGTTTTTGAT GCACTGCTGT TTGGCGCCGG CGCCCGCGTC
ACACAGGAAA CGCTCGGCTT GCTGACCGAT ACCGCGCAGG TGTGGCGTAG CGAGCTCAAG
CACTCGGCGG CGCAGGACAA TGACACTTTC ACGCCTGACG CGCAAATCTA CGTCGTCAAC
GTCAACCTGC GCGACGCACC CGAATTACTT CAGCGCAAGG CACTTCTCCA GATTCCTACT
GCATTGTCAA TTGTGCGAGC TGACGTGCGT CGCCTGGTTG AGGCAGGTCG CCACATTTTG
CTGGAGTCTC CCGAATTCAA GGCATTGCTC AAGTCTTTCG ATGGAGATCG AAAGACATAC
GCTGCCAATA AGCTATTATT TTAA
|
|---|
| Protein sequence | MLTQQLRHGF ALLLALLLTA CSSVRPWQNL PLPPDVALPA ASSLAPDVGP PVKQDSSMLF
AITISGGGAR AAAFGYGVLD ALRQTQVHWN GRDIALLDEL DVISGVSGGS FIAAYYAAFG
QRTFPAFEKD FLYQNFQDTL ISNVLRPAAL YELSSPWFGR TQLLARRLDE LFKGKTFGDL
AARPGLLISA TDLSLGSSFV FSQEQFELIC SDLASVPLSF AVASSSAVPI ALSPTTLKNH
NDVCPRPPNS LNGAAPTDYR VRLLRDSQRS YLDAKTRPYI HLVDGGLADN LGLRTLLEQS
LAAGGIRNAA RRTSKNAIQK LVIIAINAER DPSERIDASD KVPDTLQVFD ALLFGAGARV
TQETLGLLTD TAQVWRSELK HSAAQDNDTF TPDAQIYVVN VNLRDAPELL QRKALLQIPT
ALSIVRADVR RLVEAGRHIL LESPEFKALL KSFDGDRKTY AANKLLF
|
|---|
| |