| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1987 |
|---|
| Symbol | |
|---|
| ID | 3964343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2142097 |
|---|
| End bp | 2143323 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637916807 |
|---|
| Product | D-amino-acid dehydrogenase |
|---|
| Protein accession | YP_523243 |
|---|
| Protein GI | 89900772 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.312854 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTG CAGTTATTGG CGCCGGCATC ATCGGCGTCA CCACGGCCTA TGAGCTGAGC
CGTGATGGGC ACGATGTCAC CGTGCTGGAA CGCTGTGGTG CCGCAGCCGA AGAAGCCAGT
TTTGCCAATG CCGGCATCGT GGCACCCGGC ATGCCGAACC GGGAAGTGAG CCCTATTTTC
AGCCGCCCTA CCCCCATCAG ACTGAGCTGG CCAATTTCGG CTCACGAGCT GGCCTGGTTC
TGGAAGTGGC GCCGCGCCCG TCGGCTTGAC CGCCATCGGG CCAGTCAGGC TCAGAGGCAG
AGCCTGGCCA GCTACAGCCG TGAACGTTTG CACCACATCA CGGCGGATTT AAAACTGGAC
TACGAACGCA GCGAGGGTCT CCTGATGTTG CTGCGCTCCG AGCAGGACAG CAAAATGGTA
CAGCCTGGTC TGCAGCTGAT GCGTGAAGCG GGCCGGGATT TCAAGGAACT GAGCGCACCC
GACGTCCGCA AGCTGGAGCC GGCCTTGAGT CCGGACACGC CATTTTTTGG TGCCATTCAA
CTCATCGATG CGGAGGTCGC CAACTGCCGC CAGTTTGCCC TGCTGCTCAA AAACGAGTCG
CAACGCTGTG GCGTCAAATT TGAGTTCAAC ACCGAAGTCA CACACATCAG CAGCGCCGGC
GGCGTCACGC TCACGGTCGC CGGCGAAACC GGCGCCCGCC CCTTTGACGC CGCTGTGATC
TGCGCGGGGA CCGATTCGGC GCGCTTGCTC GGCCCGCTGG GCATCAGGCT GGCGCTGGCC
GCCGTCCATG GCTACTCCAT CAGCGCGCCT ATTCGCGAGC CGCTCAACGC GCCGCGCAGT
GGCGTCATCG ATCGGCGCCA CCAAGTGGCT ATCACCCGCC TGGGCAACCG GGTGCGCGTG
TCAGGCCTGG CCGAACTGGG CGGCGTACCT GGAAGAAACC GGGCCGACGC CCTGCAAACC
CTCTACCGGG TGTTGCATGA CTGGTTCCCG GGCGCCGCCA AACTGTCAAG CGGCGTGCAG
GAGTGGAAAG GTGCACGCCC GATGTTGCCC GACGGGGCGC CGGTTGTGGG CGCCAGCGGT
GTGCCGGGCC TGTGGCTGAA CCTGGGGCAT GGGGCCAGTG GCTGGGCCTT GAGTTGCGGC
TCAGCCCGTG TTTTGGCCGA CCTGATGGCG GGCAGACCAC CTGACCTCGA CGTCAACGCA
TTCGGCATCG AACGGCTGGG GCGCTAA
|
|---|
| Protein sequence | MKIAVIGAGI IGVTTAYELS RDGHDVTVLE RCGAAAEEAS FANAGIVAPG MPNREVSPIF
SRPTPIRLSW PISAHELAWF WKWRRARRLD RHRASQAQRQ SLASYSRERL HHITADLKLD
YERSEGLLML LRSEQDSKMV QPGLQLMREA GRDFKELSAP DVRKLEPALS PDTPFFGAIQ
LIDAEVANCR QFALLLKNES QRCGVKFEFN TEVTHISSAG GVTLTVAGET GARPFDAAVI
CAGTDSARLL GPLGIRLALA AVHGYSISAP IREPLNAPRS GVIDRRHQVA ITRLGNRVRV
SGLAELGGVP GRNRADALQT LYRVLHDWFP GAAKLSSGVQ EWKGARPMLP DGAPVVGASG
VPGLWLNLGH GASGWALSCG SARVLADLMA GRPPDLDVNA FGIERLGR
|
|---|
| |