| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1978 |
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| Symbol | |
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| ID | 3964334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2124591 |
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| End bp | 2126252 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637916798 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_523234 |
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| Protein GI | 89900763 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.260474 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCGC TGGCCAGACT GATGCTCGAC AACAGCCCCG AGATGGTGCT GTTGGTCAAC
CCGGCAACAC TGCAGATCAT GATGGCCAAC GCGTCGGTGG TCAAGACACT GGGCTACTCG
CTGGCGCAGT TGCAGGGCTT GGCGATCACC GAGATTGAAA GTGCGCTACA GGATGTTTTT
TATTGGGAGG ACGTTCGAAC TGGCCAGTGT CTTGAAGTAC AGAGTCAGGA GGGGCAGTAT
CGCTGCGCGC AGGGAGAACT TTTGACGGTC AGCAAGTCAA TTCGGCTGCT TGACCAAGAC
GGGGCGCCTC TGCTGCTGGT GCAGGCCGTG CAGACCCGCA ATGAGCGCAA GGCGGAGGAC
GCGCTGGCAC AAACCTTGTC GCAGTTGCGA GCCACGCTGG AGTCCACTGG CAATGGCATC
CTGGTCATTG GCTGGCAAGG CCGGATCGAG AGTATGAACC GCCTGTTTGG CAAGATGTGG
GAGATTTCTG ACGATCTGCT CGACTCGCAT GACGATGCGC GCATTCTGGG TTTTGTGGCC
GGGCGTGTCA TCGAGTCCGG GCTGCTTCAC GCGCGACTGG GTGCGATCGT GGACAAGCGC
GAGACCGAAG ACCTGCTGCA CCACCAGGAC GGTCGCGTGT TCGAGGTCAG CTCGCGTCCG
CAGTACCTGG GTGAGCAGAT TATCGGCCGC GTGTTTGGTT TTCAGGACAT CACCCAGCGC
ACGCTGGCCG AAGCCGCATT GCGTGAATCG CGCGACTTGC TGGAACAAAG GGTGCGATCC
CGAACAGCCG ACTTGAATAC CGCCAATGAG ACGCTGCAGC AGGAAAAGGA GCGCCAGGCC
ATTTTGATCA AGCGACTGGA AGAGGCGCAA AACCAGCTGC TGCAATCGGA GCGCATGGCG
TCCATCGGCC AACTGGCGGC CGGCGTCGCG CATGAAATCA ACAATCCGGT GGGGTTTGTC
AACTCCAATC TGGGCTCCTT GCAGCGCTAT GTCACCGACA TGCTCAGGTT GCTGTCGGTC
TACGAGAAGG CTGAAGGCGC CCTCCCTGGG GCGGCGACGC AAGAGATAAA CCAGGTCAAG
GCGGACATTG ATGTCGAGTT CCTGCGCGAA GACGTCGCCA ACTTGCTCGT CGAATCGCTG
GACGGGCTCA AGCGCGTCAC GCGCATCGTG CAGGACTTGA AAGATTTTTC TCATGTGGAT
GAATCAGAGC GCCAGTGGGC CGACCTGGAG GCCGGGCTGG AGAGCACCTT GCGCGTGGTC
TGGAACGAGC TCAAGTACAA GGCCGAGGTG ATCAAGGAGT TTGCAGGTAT TCCGCAAGTC
GAATGCTTTG CTTTTCAGCT TAACCAGGTG TTCATGAACC TCTTGATCAA CGCCTCGCAC
GCCATTGAAG GGCGTGGCAC CATTGCCATC CGCACCGGGC ACGACGACGC CTGTGTGTGG
GTGGAAGTGC AAGACAGCGG CCGCGGCATC CAGCCGGAGC ATCTGTCCCG GATTTTTGAA
CCGTTCTTCA CGACCAAACC AGTCGGCCAA GGCACCGGGC TGGGCCTTTC ACTGGCTTAC
GGTATTGTCA AAAAACACGA TGGGCGCATT GAGGTCAAGA GCGAATTGGG ACAGGGGACG
GTGTTCAGGG TGATCCTGCC CAAGAAAACC AAGACACTAT AA
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| Protein sequence | MNALARLMLD NSPEMVLLVN PATLQIMMAN ASVVKTLGYS LAQLQGLAIT EIESALQDVF
YWEDVRTGQC LEVQSQEGQY RCAQGELLTV SKSIRLLDQD GAPLLLVQAV QTRNERKAED
ALAQTLSQLR ATLESTGNGI LVIGWQGRIE SMNRLFGKMW EISDDLLDSH DDARILGFVA
GRVIESGLLH ARLGAIVDKR ETEDLLHHQD GRVFEVSSRP QYLGEQIIGR VFGFQDITQR
TLAEAALRES RDLLEQRVRS RTADLNTANE TLQQEKERQA ILIKRLEEAQ NQLLQSERMA
SIGQLAAGVA HEINNPVGFV NSNLGSLQRY VTDMLRLLSV YEKAEGALPG AATQEINQVK
ADIDVEFLRE DVANLLVESL DGLKRVTRIV QDLKDFSHVD ESERQWADLE AGLESTLRVV
WNELKYKAEV IKEFAGIPQV ECFAFQLNQV FMNLLINASH AIEGRGTIAI RTGHDDACVW
VEVQDSGRGI QPEHLSRIFE PFFTTKPVGQ GTGLGLSLAY GIVKKHDGRI EVKSELGQGT
VFRVILPKKT KTL
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