| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1897 |
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| Symbol | |
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| ID | 3963226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2036027 |
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| End bp | 2039293 |
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| Gene Length | 3267 bp |
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| Protein Length | 1088 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637916717 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_523154 |
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| Protein GI | 89900683 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGCCT GGGTCATCCT TTTCTCCGTC GCAGTCTATC TGGGACTGCT CTTCTTCATC
GCCTACCGCG GCGACAAGGC GGCCGATGCC GGACGCAGCC TGATCGCCAG CCCCTATGTG
TATGCCCTCT CACTGGGCGT CTACACCTCC GCCTGGACCT TCTACGGCAG CGTCGGGCGC
GCCGCCACCA GCGGTATTGG CTTCCTTCCC GTCTATCTCG GACCCACCGT CATGATCGCC
CTGTGGTGGA TGGTACTGCG CAAGATCATC CGAATCTCCA AGGACAACCG CATCACATCG
CTGGCCGATT TCATTTCATC ACGCTACGGC AAGAGTGCGG CGCTGGCCGG ATTGGTCACG
GTGATCGCAT TGGTCGGCGT CACACCCTAC ATTTCGCTGC AACTGAAGGC GATTTCCACC
AGCTTCGGCA TCCTGCGCAG CTACCCCGAC ATCCTGTTGC TGGCACCGCC GCAGCCGCCG
CAGAGCATCT GGCACGACAC GGCGTTTTAC GCGGCCCTGA TCCTGGCGGC GTTCACCATC
GTTTTCGGCA CCCGCAAGAT CGACGCCGCA GAGCGTCACG AGGGCCTGGT GGCCGCGATT
GCCTTCGAGT CGTTGGTCAA GCTGCTGGCC TTTCTAGCAG TCGGCATCTT CGTCACCTGG
GGCATGTATG ACGGCGTGCG TGACATCTTC GCCCGTGCCG CGCAAGTGCC GCGCATCGCT
GAAGTCTTCA CCATTGGCGG CTCGACCGAG GCCTACCGCG GCTGGACCTC GCCCGCCGAC
GCTGCCACTC GGCTGGCGTT GGCACCGGGC ACAGTCATGG ACATCTACCA GAGCTGGGCC
GAGCTGTTCT CGACAGCCTT CGTCGGGATG CTGGCCATCA TGTTCCTGCC GCGCCAGTTC
CAGATCGCCG TCGTTGAGAA TGTCGACGAG GCACATCTGA ACAAGGCGAT CTGGCTCTTT
CCCCTTTACC TCTTCCTGTT CTCCCTCTTC GTCCTGCCAA TCGCCATGGG CGGCCTGTTG
CATTTTGGCA CCAGCGTCAA TCCTGATGCC TTCGTCCTGA CCCTGCCCCT GGCCGGACAG
CAGAAAGCAC TGGCGCTGCT GGTCTTCCTC GGCGGCTTCT CGGCCGCCAC CGGCATGGTG
ATCGTCGAGA GCATCGCCCT GTCGACCATG GTCTGCAACG ACCTGGTCAT GCCGATCTTG
CTGCGCATCA AGGCGCTGCG TCTGACCGAG CGCGCCGATA TCTCCGCCCT GCTGCTGGCG
ATCCGTCGCA TCACCATCGT GCTCGGCCTG CTGCTCGGCT ACACCTATTA CCGGCTGGCA
GGCGAGGCTT ACGCGCTGGT GTCGATTGGC CTCATTTCCT TCGCCGCCGT CGCCCAGTTC
GCCCCGGCGC TGCTGGGCGG CATCTACTGG AAGGGCGGTA CGCGAAGCGG CGCACTGTCC
GGGCTAGGCG CCGGCTTCCT GGTCTGGGCC TATACGCTGA TGCTGCCGGC TTTCGCCCGC
TCCGGCTGGC TGCCCATGGC GCTGCTGGAA CACGGGCCGT TTGCCATCGC GCAGCTGCGC
CCGCTTGCCC TGTTCGGCCT GGACGGGCTC GACGAAATCA GCCACGCCAT GCTCTGGAGC
ATGCTGGCCA ACGTCGGCGC CTACCTGACG GTGTCGATCA TGAGCGGGCA GAGCCTGGTC
GAACAGACGC AGGCAGCGCT GTTCGTCGAC GTCTTCAAGC ATGGCCGCGG CGCCGAGAGG
GTCTGGCGCG CGAGCGGCTC GCTGCTCGAT CTGCACACGC TGATGGTGCG TTTTCTTGGC
GCCGAGAACG CCCGCCAGGC GCTCGTTGCC TACGCCCGCC AGCGCGGCCT GGAATGGCCG
CAGGAGATCG ACGCCGAGCT GTCGCGTTAC TGCGAGGCGC AACTGGCGGG CGCCATCGGC
ACCGCCTCGG CAAGGGTCAT GATTGCGTCA GTGATCGAGG AAGAACTGCT GCGCGACAGC
CTCACCGGTC TGCCCAACCG CGCGCTGCTT CTGACCCGGA TCGACGATGC CATGAAACGC
ATCCAGATCG AATCCAGGCG CGGCTTTGCG CTGGTGTTCC TCACGCTTGA CCGCTTCCGC
ACGATCACCG ACAGCCTGGG CGGCGCCTAC GGCGACCAGT TGCTGATCGC CATCGCGCAA
CGCCTGGGTA CCGGCCTGCG CCCCGGTGAC ACGATCGCCC GCATCGGCGG CGAAAGCTTC
GCCATCCTCC TCGACGAAAC CAAGGACGCA GAGGTGGCGG CACGTTACGC CGAGCAGCTG
CAATCTGCGC TGGCGGTCGG CTTCAACCTG GAGGGGCATG AACTATTCAC GACCGCCAGC
ATCGGCATCG TTCTTGGCCA CTCGGGCTAC GTCGACGCCG GCGAGCTCCT GCGCGACGCC
GAGACGGCCA GCCACAACGC CGAGCGGCGC GGCGGGGCGT GCTACGAGTT GTTCGCCGCC
GATATGCGCG AGCGTGTCGT CGCTCTTCTC GAAATGGAAA CCGAGTTGCG CCGGGCAGTG
GCGCACGGCG AGGAATTCCT TGTCTATTAC CAGCCCGTGG TGTCGCTGCA AACGGGCCGG
CTGGCGGGTT TCGAGGCCCT CGTTCGCATG CGTCGCCCCG ATGGCAAACT GGTACCACCG
AGCGAATTTA TCCCGCTCAC CGAGGAGACC GGCCTCATCG TCTCAATCGG TCGCTGGGTG
TTGACCGAGG CCTGCCGCCA GATGCACAGC TGGCAGCAAC GCTACCCGGA TCACCCGCCC
ATGCAGATCA GCGTCAACCT TGCCGGGCGG CAGTTCACCC AGCCCGCCCT GCTGCAGCAA
ATCGAAGCCG CGTTGGCGGA AACCGGCCTG GCCACCAGCA GTCTCAAGCT CGAAGTGACC
GAGACCCTGC TCATGGCGCA CGCCGAGGAG GCGGCGGTGG CGCTGGAGAA ATTAAGCGCC
CTTGGGATCA AGCTGCTGAT GGACGACTTC GGCACCGGTT ATTCATCGCT GTCCTACCTG
TACCGTTTTC CGATCAACAC ACTGAAAATC GACGCCTCGT TCGTGCGCCG CATGGACGTT
GACCGCAAGA GCGCCGACAT CATCCAGAGC ATCGTCACCC TGGCCCATGC CCTGAACATG
GACATCATTG CCGAGGGGGT GGAGAATGCC GCGCAGTTGG CACAGTTACG GGCGCTGCAG
GTGGAATACG GGCAGGGCTA CCATTTTGGC CAGCCGCTCG ATGCGGCGGC GGCCGAAGCG
ATGATCGTCG CCCGGCCGGT CTGGTAG
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| Protein sequence | MSAWVILFSV AVYLGLLFFI AYRGDKAADA GRSLIASPYV YALSLGVYTS AWTFYGSVGR
AATSGIGFLP VYLGPTVMIA LWWMVLRKII RISKDNRITS LADFISSRYG KSAALAGLVT
VIALVGVTPY ISLQLKAIST SFGILRSYPD ILLLAPPQPP QSIWHDTAFY AALILAAFTI
VFGTRKIDAA ERHEGLVAAI AFESLVKLLA FLAVGIFVTW GMYDGVRDIF ARAAQVPRIA
EVFTIGGSTE AYRGWTSPAD AATRLALAPG TVMDIYQSWA ELFSTAFVGM LAIMFLPRQF
QIAVVENVDE AHLNKAIWLF PLYLFLFSLF VLPIAMGGLL HFGTSVNPDA FVLTLPLAGQ
QKALALLVFL GGFSAATGMV IVESIALSTM VCNDLVMPIL LRIKALRLTE RADISALLLA
IRRITIVLGL LLGYTYYRLA GEAYALVSIG LISFAAVAQF APALLGGIYW KGGTRSGALS
GLGAGFLVWA YTLMLPAFAR SGWLPMALLE HGPFAIAQLR PLALFGLDGL DEISHAMLWS
MLANVGAYLT VSIMSGQSLV EQTQAALFVD VFKHGRGAER VWRASGSLLD LHTLMVRFLG
AENARQALVA YARQRGLEWP QEIDAELSRY CEAQLAGAIG TASARVMIAS VIEEELLRDS
LTGLPNRALL LTRIDDAMKR IQIESRRGFA LVFLTLDRFR TITDSLGGAY GDQLLIAIAQ
RLGTGLRPGD TIARIGGESF AILLDETKDA EVAARYAEQL QSALAVGFNL EGHELFTTAS
IGIVLGHSGY VDAGELLRDA ETASHNAERR GGACYELFAA DMRERVVALL EMETELRRAV
AHGEEFLVYY QPVVSLQTGR LAGFEALVRM RRPDGKLVPP SEFIPLTEET GLIVSIGRWV
LTEACRQMHS WQQRYPDHPP MQISVNLAGR QFTQPALLQQ IEAALAETGL ATSSLKLEVT
ETLLMAHAEE AAVALEKLSA LGIKLLMDDF GTGYSSLSYL YRFPINTLKI DASFVRRMDV
DRKSADIIQS IVTLAHALNM DIIAEGVENA AQLAQLRALQ VEYGQGYHFG QPLDAAAAEA
MIVARPVW
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