Gene Rfer_1743 details

Gene Information

• Locus tag: Rfer_1743
• Symbol: rnc
• ID: 3962444
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 1879429
• End bp: 1880115
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637916566
• Product: ribonuclease III
• Protein accession: YP_523003
• Protein GI: 89900532
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00285294
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATAATG GTTTGATGGC GCTGCAGGCT CGCTTGCAGC ATGAGTTTTC CAACCCGGGT 
TTGTTGACGC GCGCGCTCAC CCATCGCAGT TTTTCACTTG ATCACAATGA ACGGCTGGAG 
TTTCTGGGCG ACTCGGTGCT GGGTCTGGCT GTGGCTGATC TGCTGTACGA GCGCCTGAGC 
ACGCTGCCGG AGGGTGATTT GTCGCGCGTG CGTGCCAATC TGGTCAAGCA AGATACGCTG 
CATCATTTGG CGCTGGGCTT GGGTTTGCCC GAGGTCATTC GACTGGGCGA AGGCGAGGCC 
CGCTCCGGCG GACATAAGCG GCCTTCTATC CTGGCTGACG CGCTGGAGGC TGTCATTGGG 
GCGGTTTATC TGGACGCCGG TTTTGCCGTG GCACAAGGCT TGGTGCGGCG CCTGTTCCAG 
GCGGTTGAAA TCAAATCCGA CATGGAAGCC ATTGGCAAGG ACCCGAAGAC CGAATTGCAG 
GAATGGTTGC AAGGGCGCAA GATGAACCTG CCGCTGTACC GGGTGGTTGC CACCCTAGGG 
GCGGCGCACA AGCAGACGTT TGACGTCGAG TGCGAAATTG TCGAACTTAA CTTTTTAGAA 
CGTGGCATCG GCGGCTCCCG TCGTGCTGGC GAACAGGCCG CAGCTGCTGC GATGCTGCAA 
ACACTCAAGG CAAAGGCCGC GCAATGA 

 

Protein sequence

MNNGLMALQA RLQHEFSNPG LLTRALTHRS FSLDHNERLE FLGDSVLGLA VADLLYERLS 
TLPEGDLSRV RANLVKQDTL HHLALGLGLP EVIRLGEGEA RSGGHKRPSI LADALEAVIG 
AVYLDAGFAV AQGLVRRLFQ AVEIKSDMEA IGKDPKTELQ EWLQGRKMNL PLYRVVATLG 
AAHKQTFDVE CEIVELNFLE RGIGGSRRAG EQAAAAAMLQ TLKAKAAQ