| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1719 |
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| Symbol | |
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| ID | 3964018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1855635 |
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| End bp | 1856708 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637916542 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_522979 |
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| Protein GI | 89900508 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCT TGATCGAACA CATTCTCAAG CTGACCGACC ATCGGGATCG GGATTTGCTG
GAACTCACGC TCTCCAAGGC GCTGATTGAT CTGTTGCCGA TTCAGCGCAT CGTCATTGCA
CGCGTGATGA GTGAGGAGGC TGAACAGCGC TGGCTGGAGG TGGCGCGGCT CGACGCCAGG
GGCGGCGGCA AAGTCGTTGA TCCGATGCGG GTTGACTTCT TGACATTGGC CCGCCTGAAC
GATGCGACGG ATCGCCTGAA GTGTCTGTTG GGCCGTGAAA TGATCGAAAT AGCATGGGCT
GGAGACGAGG GTCCGCGCAT TTACATGCTC CCCCTGTTTT CTGATTCACG CAAGGATGAT
GCGGGCGTTA TCGAACTTCA CTCGGATTCG ACCTTGGCCG CAGAACATCT TCTGATGGTC
GAGCAATTGC GCCGTATTTA CCGCAACATG TATACCTTGC TGGAGTACAG CGACCGCGAT
GCTCTGACCG GCCTGCTCAA CCGTAAATCC CTGGATGATG CTTTTTACAG TGCGGTGCTG
GAAGAGCTTG ACGGTCTCGC CGGTGAGGCC CGAACGGCGG GCTCTCCCAA AGGACTGGAT
CAGGAGCGTC GCCATCGGGT GCCGGCTAAT TACTGGCTTG GCTCGGCCAT TGTTGACAAC
TTTGAACAGG TCGGCGAGAA GCATGGTCAT CTGATCGCCG AAGAAGTGCT GCTGCTGGTA
GCTCGTGTGA TGAACAACAC ATTTCGCACT TACGATCGCC TTTACCGCTT TGGCGGTGAG
CATTTTGGTG TGTTGATGCA TTGCCCCGAC GAGGCCTTGG TGCTGGCTGC CTTTGAGCGT
TTTCGTGTCA GTGTTGAAAA GTTCAATTTT CCGAAGGTCG GCCGGGTTAC GGTGAGTTGC
GGTTTTACCA ATGTGCTGGC GGATGATTCA CCCAGCAGCG CGCTGGAAAA AACAGAGCGT
GCAGTCGATT TTGCGCAGCG AAGCGGCGGC AATAAAGTGT GCAGTCATAT CGGCTTGGTG
CGTCGAGGCT ACTTTGGAGA CGCGCCCAAG GTGGGGGCAG TCGACATTTC TTGA
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| Protein sequence | MSTLIEHILK LTDHRDRDLL ELTLSKALID LLPIQRIVIA RVMSEEAEQR WLEVARLDAR
GGGKVVDPMR VDFLTLARLN DATDRLKCLL GREMIEIAWA GDEGPRIYML PLFSDSRKDD
AGVIELHSDS TLAAEHLLMV EQLRRIYRNM YTLLEYSDRD ALTGLLNRKS LDDAFYSAVL
EELDGLAGEA RTAGSPKGLD QERRHRVPAN YWLGSAIVDN FEQVGEKHGH LIAEEVLLLV
ARVMNNTFRT YDRLYRFGGE HFGVLMHCPD EALVLAAFER FRVSVEKFNF PKVGRVTVSC
GFTNVLADDS PSSALEKTER AVDFAQRSGG NKVCSHIGLV RRGYFGDAPK VGAVDIS
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