| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1592 |
|---|
| Symbol | |
|---|
| ID | 3960643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1722838 |
|---|
| End bp | 1724703 |
|---|
| Gene Length | 1866 bp |
|---|
| Protein Length | 621 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637916416 |
|---|
| Product | surface antigen (D15) |
|---|
| Protein accession | YP_522855 |
|---|
| Protein GI | 89900384 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0729] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.279798 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATGGG CGCTGACCAG TCTGCTTGCA ACCATGATGC TGGCGCTTGC CCCCGCGCAG
CTGCGGGCGC AAGAGCTGGC AGCCGGCCCG ACAGTTGCTG CGTCAGCCGC CGCTGTGCCG
GCGGCGCCGG CGCAGGCGGC GTTCGAACTC ACCATCGAGG CGCCCGATGA AATTCGCGAG
CTGTTGCAGC GCCATCTTGA ACTGTTGCGC TACCGGGAAC TGACGGACCT GAGCGACAGC
GAACTGGCGC GCTTGCTGAC AGCGGCCGAA CAAAACACGC AGGAGCTGGT GGCCACGCTG
GGCTATTTCT CGCCTGACAT CCGGTTCGAG CAGCAAGCCC CCGGCAACGG CGCCTCGACG
CGCTTGTTGA AACTGCGCGT CGTGCCCGGC GAGCCCACCG TGGTGGGTGA AGTGAAGGTT
GAACTCAAAG GCCCGATCGC CACCGACCCG GCGGCGTCCC GGCAACGCCA GCAGATTGAA
GACGATTGGT TGTTGCGATC CGGCATGCGC TTTACCCAGG CCCGCTGGAC CGCGGCCAAG
CAGCAGGCGC TGCGCCAGCT CACCAGCCGG CGCTACCCCA CAGGACAACT CAGCGCCACC
CTGGCGGACA TTGATCCGGT CACCCGCCGC GCACGTTTGG ACATCACGCT GGACTCAGGC
CCGGCTTACC AGCTCGGTGG CCTGGTGATC AGCGGACTGG AGCGTTTTGA TGCTGCTCTG
GTGGCGCGGC TGGCGCGCCT GACGCCCGGC GCCAGCTACG ACCAGGTGCA GCTGGTGGCT
GCACAGCAGC GCCTGGCGGA CAGCGGATTT TTCGACTCGG CCTATGTCTC GCTCGACACC
TCGGGCGACC CGTCCGCCAC GCCGGTGTTG GTGCAGCTGC GCGAGGCGTG CCTGCAAAAG
CTGGTACTCG GTATAGGCGC CAGTACCGAC GGCGGCGCCC GCCTGTCGGT CGAACACACG
CACCACAAAG TCCCGGGTAT CGGCTGGCGC GCCGTCAGCA AGCTGATGCT GGACCGCGAG
ACGCGCGCGA TTGGCAGCGA GCTGACCTCG CCGCCCGACG CGGACAACTG GCGCTGGGTC
ACGGCAGTCC AGGTGCAGAA GCAGCGGCTT GGCAGCTTCG ATGTCAACAG CCAAAGCCTG
CGCGGCGGGC GCAGCCAGAG CGGGGACCGG ATTGACCGCA ACTACTACCT GCAATACGAC
CGGGCCGACA GCGCCACCAG CGATGCCAGC GCACCCGCCA CGGCCGCAGC GCTGAGCGCC
AACTACGCCT TCACCCTGCG AAACTTTGAC AGCCTGCCCT TTCCCAACAG CGGCTGGGGT
TTCGGCGTGG AGGTGGGCGG CGGCACCACG CTGGGCAGTC AGCGTGACCC GTACGGCCGC
ACTCTGGCGC GCGCGCTGGG CTATTGGCCG TTGGGGCGCA GCGCCGATGG TGCATCAAGC
GCCCTGCGTG CCGGCCGCCT GGCACTGCGC GCCGAGGCGG GCGCGGTAGT CGCCAAAGAT
GGCATCAACT TGCCCAGCAC CCAACTGTTT CTGACCGGGG GCGACAAGAC GGTGCGCGGC
TATGGCTACC GCGACCTCGG CGTCACGCTG CCAGACGGGC AAACCACGGC AGGGCGTTAC
CTGGCGGTGG GCAGTCTGGA GTGGCAGCGC CCCATCGTCA AGGATGGTCG TTTGACCGAC
TGGGAAAGCA CCGTCTTCAT GGATGCCGGG GCCGTGGCCG ACAAGCCGGC CGAGCTGCGC
GCCAAGGTTG GCGTGGGTGT CGGCGCGCGC TGGAAGAGCC CGGTCGGGCC GCTGCAGATT
GACCTGGCCT ACGGCGTGGC GGTTAAACGC TTTCGCTTGC ACCTGAATGT GGGGTTCAGC
TTTTAA
|
|---|
| Protein sequence | MKWALTSLLA TMMLALAPAQ LRAQELAAGP TVAASAAAVP AAPAQAAFEL TIEAPDEIRE
LLQRHLELLR YRELTDLSDS ELARLLTAAE QNTQELVATL GYFSPDIRFE QQAPGNGAST
RLLKLRVVPG EPTVVGEVKV ELKGPIATDP AASRQRQQIE DDWLLRSGMR FTQARWTAAK
QQALRQLTSR RYPTGQLSAT LADIDPVTRR ARLDITLDSG PAYQLGGLVI SGLERFDAAL
VARLARLTPG ASYDQVQLVA AQQRLADSGF FDSAYVSLDT SGDPSATPVL VQLREACLQK
LVLGIGASTD GGARLSVEHT HHKVPGIGWR AVSKLMLDRE TRAIGSELTS PPDADNWRWV
TAVQVQKQRL GSFDVNSQSL RGGRSQSGDR IDRNYYLQYD RADSATSDAS APATAAALSA
NYAFTLRNFD SLPFPNSGWG FGVEVGGGTT LGSQRDPYGR TLARALGYWP LGRSADGASS
ALRAGRLALR AEAGAVVAKD GINLPSTQLF LTGGDKTVRG YGYRDLGVTL PDGQTTAGRY
LAVGSLEWQR PIVKDGRLTD WESTVFMDAG AVADKPAELR AKVGVGVGAR WKSPVGPLQI
DLAYGVAVKR FRLHLNVGFS F
|
|---|
| |