| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1550 |
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| Symbol | |
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| ID | 3960539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1669810 |
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| End bp | 1670694 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637916369 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_522813 |
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| Protein GI | 89900342 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACACC CCGCCACGGC TAAGCGACCC GCCCCCGATC CGATCACGCA CTATGAGAAT
TTTCCCGTCG CATCCTGGTT GTGTCCGGCC CACTTGCGTG CCCCGATTAC CGCGCTGTAC
CACTTTGCCC GCACCGCCGA CGACCTGGCC GATGAAGGCG ATGCCACGGC GACGCAGCGC
CTGCAAGACC TGCAGGACTA CCGCCAACAG CTGACCCATG CCTGTCAAAC GACTGGCGCT
GCAGCCGACA CTGACCGCAA GGCGCGCTGG GCGTCCGTAT TCGGGCCATT GCAACACGCC
GTGCAGACGC ACCAGTTGCC CGCGCCGCTC CTGCACGACT TGCTCGATGC GTTTGTGCAA
GACGTTGAAA AAACACGCAA CGGCAGCGGC TACGCCACCC AGGCCGAGTT GCTGGACTAT
TGCCGCCGCT CCGCCAACCC GATTGGTCGC CTGCTGCTGC ACCTCTACGG CGTGACAGAT
ACGCAGGCGC TGGCCCTGAG CGACGACATC TGCACCGCGC TGCAGCTGAT CAACTTCTGG
CAAGACCCGA GCCGCGACCT GCCGCGCGGG CGCAACTACT TCGTGACCGA CGACTGCGAG
CGCTTTGGCG TCGCGCTGGC CGATCTGCAG ACTTGCCAAC AAACCCAATC AGTGACCAAT
TTGATAGCGG CCTACGCAGC TGCAGCAAGG GCCAGGATGC TGAAAGGCTC TGAACTGGTG
CACCTGATTG CGGGCCGTGC CGGCTGGGAG CTGCGCCTGG TGGTGCAAGG GGGCCTGCGC
ATTCTGGACA AGATCGACGC CCTGCACTTT GCCACGCTGC GCCAGCGCCC ACGCCTGCGC
TGGTGGGACG CGCCCATCCT GCTGTGGCGC GCCCTGTGGA TGTAA
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| Protein sequence | MQHPATAKRP APDPITHYEN FPVASWLCPA HLRAPITALY HFARTADDLA DEGDATATQR
LQDLQDYRQQ LTHACQTTGA AADTDRKARW ASVFGPLQHA VQTHQLPAPL LHDLLDAFVQ
DVEKTRNGSG YATQAELLDY CRRSANPIGR LLLHLYGVTD TQALALSDDI CTALQLINFW
QDPSRDLPRG RNYFVTDDCE RFGVALADLQ TCQQTQSVTN LIAAYAAAAR ARMLKGSELV
HLIAGRAGWE LRLVVQGGLR ILDKIDALHF ATLRQRPRLR WWDAPILLWR ALWM
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