| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1381 |
|---|
| Symbol | |
|---|
| ID | 3960205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1492652 |
|---|
| End bp | 1493959 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637916198 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_522646 |
|---|
| Protein GI | 89900175 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0044] Dihydroorotase and related cyclic amidohydrolases |
|---|
| TIGRFAM ID | [TIGR00857] dihydroorotase, multifunctional complex type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.849591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAC TGACGAATAT TCTGATCAAG GGCGGCCGGG TCATCGATCC GGCCAGTGGT
TTTGATGAAA TAGTGGATGT AGCCCTCGCC AATGGGACGG TTCTAGCTAT TAAAAATATA
GCTACTGATT TCCGGCCCGA TCAAATCATG GATGCCACTG GCTGCATCGT GATGCCCGGT
CTGGTGGACT TGGCGGTGCG CCTGCGCGAA CCCGGCCATG AGCACGAAGG CATGCTCGAA
TCTGAAATGG CCGCAGCGAT GGCCGGTGGC GTCACCAGCC TGGTGTGTCT GCCTGACACC
GACCCGGTGC TCGATGAACC GGGCCTGGTC GAGATGCTGC GCTTTCGGGC CGAAAAGCTG
AACCAGGCCC GGGTTTATCC GCTCGGTGCC TTGACCCGCA ATCTGGCCGG TGAATCCTTG
TCCGAGATGC AGGAACTGAC CGAGGCCGGT TGTGTCGCCT TCAGCCAGGC CGAAGTGCCC
TTGCCCAACA CGCAAGTCAT GCAACGCGCG TTTCAGTACG CCAGCACCTT CGGCTACGCC
GTCTGGTTGC GCCCGCAGGA TTTGTTTTTG GGGCAGGGCG TGGCCGCCAG CGGCGCCCTG
GCGACCCGTC TGGGTCTGAG CGGCGTGCCG GTGGCCGCCG AAACCATTGC GCTGCACACC
ATTTTTGAGC TGATGCGCGC CACCGGCGCC CGCGTTCATT TGTGCCGCCT CAGCAGTGCC
GCGGGCGTGG ACTTGGTGCG TCAGGCCAAG CTCGACGGCC TGAAGGTGAG TTGCGACATC
AGCATCAATT CGCTGCATCT GACCGATGCC GACATCGGTT ACTTTGACAG CCGAGCCCGT
CTCAACCCGC CCTTGCGCCA GCAGCGCGAC CGCGACGCGC TGCGTGCCGG TTTGCTCGAT
GGCACCATTG ACGCGCTGGT GTCCGATCAC ACGCCGGTGG ACGAAGACGC CAAAACGCTG
CCGTTTGCCG AGAGCGAGCC GGGTGCCACG GGTGTTGAGT TGCTGCTGAG TCTGGCACTC
AAATGGAGCC AGGACAGTGG TGTTGATCTG GCGCGCGCCC TGGCCGTGGT GACCCAGGGG
CCGGCCGCCG TCCTGGGCGC CTCGCTGGGC AAAAGACAAG CCAGTACCGG TCGCCTGCTG
GCGGGTGGTG CGGCCGACCT GTGCGTGTTT GACCCGGCAG CGGCCTGGAC GGTGCAGAGT
GATACCTTGC GCAGCCAGGG CAAGTACACG CCGTTCTCGG GCTACGAGTT GCCGGGCCGG
GTGCGTTGCA CGATCATGGC CGGGCGGATT GCGTTCGAAA GGAAATAG
|
|---|
| Protein sequence | MKTLTNILIK GGRVIDPASG FDEIVDVALA NGTVLAIKNI ATDFRPDQIM DATGCIVMPG
LVDLAVRLRE PGHEHEGMLE SEMAAAMAGG VTSLVCLPDT DPVLDEPGLV EMLRFRAEKL
NQARVYPLGA LTRNLAGESL SEMQELTEAG CVAFSQAEVP LPNTQVMQRA FQYASTFGYA
VWLRPQDLFL GQGVAASGAL ATRLGLSGVP VAAETIALHT IFELMRATGA RVHLCRLSSA
AGVDLVRQAK LDGLKVSCDI SINSLHLTDA DIGYFDSRAR LNPPLRQQRD RDALRAGLLD
GTIDALVSDH TPVDEDAKTL PFAESEPGAT GVELLLSLAL KWSQDSGVDL ARALAVVTQG
PAAVLGASLG KRQASTGRLL AGGAADLCVF DPAAAWTVQS DTLRSQGKYT PFSGYELPGR
VRCTIMAGRI AFERK
|
|---|
| |