| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1115 |
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| Symbol | |
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| ID | 3964353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1198050 |
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| End bp | 1200881 |
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| Gene Length | 2832 bp |
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| Protein Length | 943 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637915936 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_522387 |
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| Protein GI | 89899916 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAGTT CCGTCACCCA TCGTAGTCAG AACGCCCCTT GGCGACGTGC TGAACTGCGA
ATGAGCCCCA TCGCAGCCGC CTGCGCAACG TTGCTGTTTG CGACGGGAGC GGTTTACGCC
CAGCAACAAG AGGCAGCCGA ACTGGACACC GTGGTCGTGA CCGGCATCCG CAAGGGTATT
GAAAGTTCCA TTGCGGCAAA GCGCAATTCA GACTCCATCG TGGAAGCAGT TTCGGCGGAA
GACATTGGCA AATTGCCGGA CACCAGCATT GCTGATTCGA TCGCGCGTCT GCCAGGTTTG
GCGGCGCAGC GCGTGGACGG GCGCGCATCG GCGATCTCGA TTCGTGGGCT GGGTCCCGAT
TACGCAGGTG CCGTGCTCAA CGGGCGCGAA GTCGTCAGCT CCGGCGAAGG ACGTGCTGCA
GAGTACGATC AGTTTCCCTC AGAGTTGGTT AAACAGGTCA TTGTTTACAA GACGCCCGAT
GCCACCCTAA TCGGGCAAGG CTTGTCCGGC ACGGTCGACA TTCGTCCGGT GATGCCCTTG
GACTCGCGTG GCCGTCAAGT TGTTGTCAAC GTGCGGGGTG AGAAAAATTC CTTCGGTCAG
TTGTCGCCCC AGGGTGCAGA TGGCTTGGGC AACCGTGTCA GTGCCTCGTA TGTCAATCAG
TTCGTGGACA ACACAGTGGG TCTGGCGATC GGGTTCGCTC ATCTTGATTC TCCGGGAGAG
ACAAAAAAAT ACGAGGCCTG GAAATACGGC GACTATGCCG GGCAATGGGG TGCGGGTGCA
ACCGGTGTAC CCTCGCTTGG GGTAGGCAAC AATCGCGCCC AGTTTGCTCA AGGTTTTGAA
GCCAGCGTGA CATCCAGCAA ACAGGTGCGC GACGGTTTGA TGGCTGTGCT CGAGTTCAAG
CCGAACAAGG ACTTTCACAG CGCCGTTGAT TTGTATTACT CCAAGTTCGA TCAGGATCGC
GTCTCAAACT TTTGGGCAGG TGATATCGGG CTCTGGAGTG GCGGTGCCAA GTTTTCGAAC
GTCGGCACCT CGGTTGTCAA CGGCAATACG ATTATTGACA GCGGCACGGT GGATGGCGGA
CGCAGCCTGG TCTACGAAAA GAACTTCCAT CGCAGCGATG ACATCACTTC GCTGGGCTGG
AAAAACGAGC TGAAGCTGGC CGACAAGTGG ACAGCGGTGG CCGACCTGGG CTACTCGCGC
GCCAATCGCA ACGAGACGTA CATTCAATCC GTCGCCAAGG GTTTGGCTGG GGGCCCTCTC
ACATTTTCAG GTCTTGGCAG CACTGGTAAT CAGGCGTGGT CGACAAGCCA GGATTTGAGC
AATGCCGCCA ACGTGCAATT GACCAATGAC CCCAACTGGG CCGAAATGCG CACGCCAACC
TACAAGGACG AGATCAAGTC GTTTCGCCTG TCTGGTAAGC GCGACCTCGA AGGAGGGATG
TTCAGCGCGG TCGAGACCGG CGTGAACTAC ACCCAGCGTG ACAAGAATGT CCAGTCCGAT
GCCTATAGTC TTGCGCTGGC AAGCGCTAAT GTGGGGATAC CGGCGAGCGC CTTGCGTGGG
CCGGTAGCCA TCAATGTTGG CGGTGTTAAT GCCAGCACCG TGTCGTGGGA TGTGCCGGGC
GTGATGGGCC TGTACACGGT TACCCCGAAA GATCCGTGGT CGTCACAAAG CAACAAGTAT
GCTGTGCACG AGAAAGTCAC CACAGCATTC GCCAAACTGA ATATTGATAC CGACTGGGGT
GCAGTTCCCA TTCGAGGCAA TGTCGGGGTC CAGGCGGTTC ACACCCAGCA AAATGCCGAT
GGTTTTCAAT GGAACGACGG CGCGACACCC GGAGCACCAG GGAGCGGTTC GCTGATAGCG
ATCAACGGCG GCACCTCATA CAACGACTTC CTGCCTAGTT TGAATCTGGC TTTCAATTTG
AAACCGGATC TCATTGCGCG ATTTGGTTTG GCAAAAGCAA TGGCGCGTCC GCGCATGGAC
GACTTGCGCG CCGGAGCCGA TCAGCCGAAA CTGGTGGAAA ATTCCCCAGG TAGTGCTCTC
GGTCATTGGA CAGCCGGCGG CGGTGGCAAG CCGGATCTCC AGCCATGGCG CGCAAAATCC
CTTGACTTGT CACTGGAGAA GTACTTCGGC AAGAGCAGCT ACGTGGCGGG TGCTGCGTTC
TATAAAAAGC TCGATAGCTT CATCTACAGC CAGGATACCG TACGCGACTT CTCTGCTTTC
ACGAACTATT CACCGACCCT GACCGCTGGT TGTTCCGCAG CCAATCCAGG ATGCGATCCC
AACCAGGGAA CTATCACCAC GCAGGCAAAC GGCCAGGGTG GCTCGGTGTA TGGTCTTGAG
TTGAGCGCTT CGCTGGAGGG TGCCTTGCTG ACGCCCGCCC TGAAGGGTTT TGGCGTCATC
GTGAGCGAAT CCATCACGCG CAATAGCCTG CCCAAGGACA AGAACGGCAA TCCTATCAAT
CTCGATGGAT TTTCAGGCAT TGTTAACAAC CTGACCTTCT ATTACGAGGC GCAGGGTTTC
TCTACACGGA TCAGTCAGCG CTATCGCTCA CCCTTTACCG CCACGACACG CAGCGTGTTG
CTCGGCACCG AGACGAGCAC GCACATCGAG GCGGAAAAAC AATTGGATTT CCAAATGGGT
TACGCGTTTG AAAGCGGTCC CTACAAGGGC CTGTCACTCC TTTTGCAGGT CAACAACCTG
ACGGATGCGC CCGCCGTACA AACGCGGGGT CCTGAAGTCG TCGGCAGCGC GGGGTCAACG
ACTGGCCAAC TGCCTTGGAA AACCGAAAAT TTCGGCCGCT CGGTGCTGCT CGGCGCTACC
TATAAGTTCT GA
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| Protein sequence | MRSSVTHRSQ NAPWRRAELR MSPIAAACAT LLFATGAVYA QQQEAAELDT VVVTGIRKGI
ESSIAAKRNS DSIVEAVSAE DIGKLPDTSI ADSIARLPGL AAQRVDGRAS AISIRGLGPD
YAGAVLNGRE VVSSGEGRAA EYDQFPSELV KQVIVYKTPD ATLIGQGLSG TVDIRPVMPL
DSRGRQVVVN VRGEKNSFGQ LSPQGADGLG NRVSASYVNQ FVDNTVGLAI GFAHLDSPGE
TKKYEAWKYG DYAGQWGAGA TGVPSLGVGN NRAQFAQGFE ASVTSSKQVR DGLMAVLEFK
PNKDFHSAVD LYYSKFDQDR VSNFWAGDIG LWSGGAKFSN VGTSVVNGNT IIDSGTVDGG
RSLVYEKNFH RSDDITSLGW KNELKLADKW TAVADLGYSR ANRNETYIQS VAKGLAGGPL
TFSGLGSTGN QAWSTSQDLS NAANVQLTND PNWAEMRTPT YKDEIKSFRL SGKRDLEGGM
FSAVETGVNY TQRDKNVQSD AYSLALASAN VGIPASALRG PVAINVGGVN ASTVSWDVPG
VMGLYTVTPK DPWSSQSNKY AVHEKVTTAF AKLNIDTDWG AVPIRGNVGV QAVHTQQNAD
GFQWNDGATP GAPGSGSLIA INGGTSYNDF LPSLNLAFNL KPDLIARFGL AKAMARPRMD
DLRAGADQPK LVENSPGSAL GHWTAGGGGK PDLQPWRAKS LDLSLEKYFG KSSYVAGAAF
YKKLDSFIYS QDTVRDFSAF TNYSPTLTAG CSAANPGCDP NQGTITTQAN GQGGSVYGLE
LSASLEGALL TPALKGFGVI VSESITRNSL PKDKNGNPIN LDGFSGIVNN LTFYYEAQGF
STRISQRYRS PFTATTRSVL LGTETSTHIE AEKQLDFQMG YAFESGPYKG LSLLLQVNNL
TDAPAVQTRG PEVVGSAGST TGQLPWKTEN FGRSVLLGAT YKF
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