Gene Rfer_1048 details

Gene Information

• Locus tag: Rfer_1048
• ID: 3963744
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 1110315
• End bp: 1112378
• Gene Length: 2064 bp
• Protein Length: 687 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637915869
• Product: peptidyl-dipeptidase Dcp
• Protein accession: YP_522320
• Protein GI: 89899849
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0339] Zn-dependent oligopeptidases

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAGCG TCACCTGCGC AGCACCCGCC ATCAATCCCC TGCTGCAGGA CTGGAGCGGC 
CCTTACGGTC TGCCGCCATT TGCCGCGGTA CAGCCTGATC ACTTTTTGCC TGCATTCGAT 
GTAGCCCTGG CGGCTCATTT GGCAGAAATC GACGCCATAG CCGGTAACCC CGAGCCAGCC 
AGTTTTACCA ACACCATGCA GGCGTTTGAT GAAAGCGGTC GCCTGCGCAG CCGCACCGAA 
TTGCTGTTTC ACAACCTCAC TGCCAGCGAA ACCTCGCCTG CACTGCAGGC GCTCGAGCGT 
GAGATGGCGC CGCGCCAGGC GGCGCACAAC AATGCCGTCT ACATGAATGC GACCTTGTTC 
CAGCGCATTG ATTCACTTTA TGACCAGCGC AATTCATTGG CGTTGGACGC CGAACAACTG 
CGCTTGGTCG AACGCGTCCA TCTGGACTTT GTACGTGCAG GGGCGAAACT CGCGCCCGAG 
GCTCGACAGC GCTACGGCGC CGTGATGCAG GAGTTGGCTG GCCTGTGCGC ACAGTTTGGT 
CAAAACGTAC TGGCCGATGA GGCATCTTTT GTCTTGGAGC TCAAGGACGA GGCTGATTTG 
GTGGGCCTGC CAAAGTTTGT ACTGGCCGCA GCTGAGTCGG CTTCCACGCA GCGTGGCCTG 
CCAGTGGGCA GCCATGTGAT CACGCTGTCG CCGTCACTGG CCGAGCCCTT CCTCACCTTC 
TCAGCCCGGC GAGACTTGCG CGAACTCATC TGGCGCGCCC GGGTGGCGCG CGGGGCGCAT 
ACCGGCAGTC ATGACAACCG CCCGGTCGCG GCCCGCATCA TGGCGCTACG CCAGGAGCAG 
GCCGCTCTGC ACGGGTACGC CAGTTATGCC GACTATGAGT TGGTCGACCG CATGGCCGGC 
CAGCCCAGCG CGGTGATCGA ACTTTTGATG CAAGCCTGGG AACCCGCCAA GGCGCAGGCG 
AACGCCGACC GCGAGGCTCT GGTGGCGATG GCCAAGTCTC TGGGAGAGCC GCAAGAGCTG 
ACCGCCTGGG ACTGGCGATA CCTGGCGCAG AAGGTACGCG AGCAGCGCTA CAGCCTCGAT 
GATGCCGAGG TCAAGCCCTA TTTCGCCCTG GACAACATGA TCAACGCCAT GTTCGACTGC 
GCGCATCGCC TGTTTGGCAT CTCCTTTGTG GAACAGCAGG GCCATGCATT GCATCACCCC 
GATGCAAGAC TGTGGGAGGT GCGCGGTGGT GGCGATGAGT TGGTCGGTCT GTTCATTGGC 
GACAACTACG CCCGTCCCAG CAAGCGCAGT GGTGCCTGGA TGAGCGTTTT TCGCAGCCAG 
TCAGGCCATG CGGGTGGCAC CTTGCCGATC GTCATCAACA ACAATAATTT CGCTAAGGCC 
GCGCCCACAC TGTTGAGCTT TGCCGATGTG CGCACGCTCT TTCATGAGTT TGGCCATGGC 
CTGCACGGCC TGCTATCAAA GGCGAAGTAT GAGCGGCTGG CCGGCACGCG GGTGCTGCGC 
GACTATGTGG AGTTTCCATC GCAGTTGTTT GAAAACTGGG CACTAGAAGA TGAGGTGCTG 
ACCAGGCACG CCCGCCACTA CGCCACCGGC GAATCCCTTG GCGCTGCCCT GCTGGCCAAG 
CTCAAGGCAG CGCGTCACTT TGACCAAGCC TGGCAAACGG TGCAGTACGT CGGCCCGGCG 
CTGATTGACA TGGCCCTGCA CTCGCTGCCC AACGGCTCAC CAGTCGACAT TGCACAGTTT 
GAGCTGCAGC AGTGCCAGTT GCTCGGTGTA CCCCCCGACA TTGGCCTGCG CCACCATCTT 
TCCCATTTTC AGCACCTGTT TTCTGGGGCG AGCTATGCCG CAGGCTATTA CGTTTACATG 
TGGGCTGAGG TGCTGGAGGC AGACGGCTTT GATGCGTTCA CGCAGGCCAG TAATCCGTTT 
GACCCCGAGA CCGCTGCTCT CTTGCTGCGC CATGTCTACA GCGCGGGCAA CACGCAGGAG 
CCAATGGCAG CCTTTCGGGC GTTTCGGGGG CGCGACCCGC AAGTGGCGCC CATGCTCAAG 
AAACGTGGCT TGCTCAGCGC CTGA 

 

Protein sequence

MTSVTCAAPA INPLLQDWSG PYGLPPFAAV QPDHFLPAFD VALAAHLAEI DAIAGNPEPA 
SFTNTMQAFD ESGRLRSRTE LLFHNLTASE TSPALQALER EMAPRQAAHN NAVYMNATLF 
QRIDSLYDQR NSLALDAEQL RLVERVHLDF VRAGAKLAPE ARQRYGAVMQ ELAGLCAQFG 
QNVLADEASF VLELKDEADL VGLPKFVLAA AESASTQRGL PVGSHVITLS PSLAEPFLTF 
SARRDLRELI WRARVARGAH TGSHDNRPVA ARIMALRQEQ AALHGYASYA DYELVDRMAG 
QPSAVIELLM QAWEPAKAQA NADREALVAM AKSLGEPQEL TAWDWRYLAQ KVREQRYSLD 
DAEVKPYFAL DNMINAMFDC AHRLFGISFV EQQGHALHHP DARLWEVRGG GDELVGLFIG 
DNYARPSKRS GAWMSVFRSQ SGHAGGTLPI VINNNNFAKA APTLLSFADV RTLFHEFGHG 
LHGLLSKAKY ERLAGTRVLR DYVEFPSQLF ENWALEDEVL TRHARHYATG ESLGAALLAK 
LKAARHFDQA WQTVQYVGPA LIDMALHSLP NGSPVDIAQF ELQQCQLLGV PPDIGLRHHL 
SHFQHLFSGA SYAAGYYVYM WAEVLEADGF DAFTQASNPF DPETAALLLR HVYSAGNTQE 
PMAAFRAFRG RDPQVAPMLK KRGLLSA