| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1039 |
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| Symbol | |
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| ID | 3963638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1098132 |
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| End bp | 1100729 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637915861 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_522312 |
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| Protein GI | 89899841 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCAC CAACCTCAAC TCATCCACCC GTAGACCTGC AACAACTTGT GCAAGAGGCT
GATCTGGGAG GCCGAAAGCC AGTTGGGGCT GTCAAGGTTC TCATGTTTGC CGTCTGCATC
GGATGGTCGG TGCTACAGCT CTGGTACGCA TCGCCGCTGC CGTTTGCATT GCGATTTTTT
GTTCTCAACG ACACCGAGAT GCGGGCGCTG CATCTGTCGC TGGCCTTATT CCTGGCCTTT
CTGGCCTATC CGTTTGGCAA GCGTTCGTCG CGTGCGTTGG TCCCTTCGGT AGATTGGGTC
CTGGCGGCGC TGGCCGCCTT CTGCGCCGCC TATATTTTTC TCTTTTACCG CGAACTTTCC
ACCCGTCCCG GCCAGCCAAC GCTGGTCGAC ATGGTGGTGG CGGTGGCCGG CGTCCTGCTG
CTGCTTGAAG CGACCCGGCG CGTCGTCGGC CCGCCGATGG CCGTCATTGC CGCCTTGATG
CTGGCCTTCG CGTTTGCCGG CCCCTATATG CCCGATGCCG TGGCCCACAA AGGGGTTTCA
CTGTCCAAGG CGGTCTCGCA CTACTGGCTG TCGACCGAAG GTGTGTTCGG CGTCGCGCTC
GGGGTCTCGT CAAGCTACAT CTTTCTGTTC GTTCTTTTCG GTGGCCTGCT GGAAAAGGCC
GGTGCCGGAA GCTATTTCAT CAAGATCGCG TACGCGCTGC TCGGGCACAT GCGGGGCGGC
CCGGCCAAAG CTGCCGTCGT GTCGTCGGGA CTGATGGGCA TGATCTCGGG CTCCTCGGTC
GCCAACGTGG TGACCTGTGG CACCTTCACC ATTCCGCTGA TGAAACGGGT TGGATATCCA
GCGCACAAAG CCGGCGCTAT CGAAACCGCC GCTGGCGTGG ATGGCCAGAT CATGCCGCCG
GTCATGGGCG CAGCCGCCTT CCTGATGGCC GAATACGTCG GCGTGCCCTA CTCCGAGATT
GTCAGAAATG CGATCCTACC CGCCGCGATC TCCTACATTG CTCTGTTTTA TATCGCGCAC
CTGGAAGCGC TCAAGATGGG CATCCAGGGC TTGCCGCGCA ACAAGGGCTC GACGACCACG
GGCCGGCTGG TGGGTTTCGG GCTCACCGTC TGCAGCGTCA TCCTTCTGGC CAACGTCGTG
TATTACGGAT TGGGTTGGCT CAGGACCCTA ATGGGCAGCG CTGCGATCTG GCTTATCGTT
CCTGCGATCG TCGCGGCCTA CATCGCCATC GTGCGACAGG TCTCGAAAGA ACCCGATCTG
ACCATTGATG ACCCCAACAC CGCCATGCTG GTTCTGCCAC CGGTCAAGGA AACCATTCTG
GCGGGACTGC ACTATCTGCT GCCGGTTGTG TTGCTGATCT GGTCGCTGCT GGTCGAAGAA
CTGTCGCCTG GCCTGTCGGC GTTTTACGCA TCGATCTCGC TGGTCGTGAT CCTGTTGACG
CAAAAGTCCT TGCTCGCTTA TTTTCGGGGC CAGCCCAATC CTCTGTCCCG AGTGAAGGAC
GGCTGGAAAG ACCTGGTGGA AGGACTGGAG CTGGGCGCGC GCAACATGAT CGGCATCGGC
ATCGCCACGG CCTGCGCCGG CATCATCGTT GGAACGGTCT CGGTGACGGG CCTGGGTCTG
GTGATGACCG ATCTGGTTGA AATCGTTTCT GCCGGCAGCT TGATCGGCAT GCTGGCACTG
GTGGCGGTGG TCTGCCTGAT CCTCGGCATG GGCATGCCAA CCACCGCGAG TTACATCATT
GTCTCGACCC TGATGGCACC GGTCATCGTG GAGCTTGGCT CGCAGACCGG CTTGGTCGTT
CCCCTGGTGG CGGCGCACAT GTTTGTCTTC TATTTCGGTT TGATGGCCGA CGTCACCCCG
CCGGTCGGGC TGGCCTCGTT CGCGGCCGCC GCCATTGCCA AGGCGGATCC GATCAAGACC
GGGATCACGG CGTTCTTCTA CAGCATCCGC ACCGGCATCC TGCCCTTCAT GTTCATCTTC
AACACCGAGC TGCTGCTGAT CGGCATTCGC TCCTGGTGGA GCCTGGCGTT GACGGTGTCC
ACGGCGATTA TTGCGATGCT CGTTTTTGCC GCTGCCACGC AAGGCTGGTT CATCAGGCGC
AACCGCTGGT ACGAGTCAGC TGTGCTTTTG CTGGTGACTT TTTCGTTGCT GCGTCCCGAC
TTCTGGCTTG ACCTGATGAC ACCCAAATAC CGTGTTGAAG CTGGGACCCG ACTCGTCGAG
CTGGCCGGCG CCGGTACCCC TGGGGTGGGA CTTCGGGTGC GTATCGAGGG GACGTCCCTG
GAAGGAAAGT CGATCCACAA GACGGTTCTC CTGCCCTTGA GTGCCGAAGG CGACGGCGTC
CAGCGCATCA GGAATTCCGG CATGACCGTG ATGACCACCC CCTCGGGAGT TGAGATCATG
TCCGTCAACC TGAAAAGTAG CGCGGACAAG GCGGGCTTCG AGCAGGGATT CCAGGTCAGC
GGTGTGGAGG TGCCCTACGA TCGCATGGAC AAGCGATGGT TATATCTGCC TGCACTGCTG
CTCTTGGCGG CGGTCTATGC CGCCCAGCGC ATGCGTCCCG AGCTGCCCGT CGCGCGGGGT
CGCAACGCGG CGCCGTAA
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| Protein sequence | MTAPTSTHPP VDLQQLVQEA DLGGRKPVGA VKVLMFAVCI GWSVLQLWYA SPLPFALRFF
VLNDTEMRAL HLSLALFLAF LAYPFGKRSS RALVPSVDWV LAALAAFCAA YIFLFYRELS
TRPGQPTLVD MVVAVAGVLL LLEATRRVVG PPMAVIAALM LAFAFAGPYM PDAVAHKGVS
LSKAVSHYWL STEGVFGVAL GVSSSYIFLF VLFGGLLEKA GAGSYFIKIA YALLGHMRGG
PAKAAVVSSG LMGMISGSSV ANVVTCGTFT IPLMKRVGYP AHKAGAIETA AGVDGQIMPP
VMGAAAFLMA EYVGVPYSEI VRNAILPAAI SYIALFYIAH LEALKMGIQG LPRNKGSTTT
GRLVGFGLTV CSVILLANVV YYGLGWLRTL MGSAAIWLIV PAIVAAYIAI VRQVSKEPDL
TIDDPNTAML VLPPVKETIL AGLHYLLPVV LLIWSLLVEE LSPGLSAFYA SISLVVILLT
QKSLLAYFRG QPNPLSRVKD GWKDLVEGLE LGARNMIGIG IATACAGIIV GTVSVTGLGL
VMTDLVEIVS AGSLIGMLAL VAVVCLILGM GMPTTASYII VSTLMAPVIV ELGSQTGLVV
PLVAAHMFVF YFGLMADVTP PVGLASFAAA AIAKADPIKT GITAFFYSIR TGILPFMFIF
NTELLLIGIR SWWSLALTVS TAIIAMLVFA AATQGWFIRR NRWYESAVLL LVTFSLLRPD
FWLDLMTPKY RVEAGTRLVE LAGAGTPGVG LRVRIEGTSL EGKSIHKTVL LPLSAEGDGV
QRIRNSGMTV MTTPSGVEIM SVNLKSSADK AGFEQGFQVS GVEVPYDRMD KRWLYLPALL
LLAAVYAAQR MRPELPVARG RNAAP
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