Gene Rfer_0896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_0896 
Symbol 
ID3963612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp937478 
End bp939997 
Gene Length2520 bp 
Protein Length839 aa 
Translation table11 
GC content58% 
IMG OID637915724 
Productsignal transduction histidine kinase 
Protein accessionYP_522175 
Protein GI89899704 
COG category[T] Signal transduction mechanisms 
COG ID[COG3920] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.335338 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAGAT TCAAATTTGA GTGGAACTCG CTCAAAACGC GTGTAACGCT GCTCACATTG 
GGGATCTTTG TGATCAGCAT CTGGTCGCTG ACTTTTTACA CGGGTCGTAT GCTGCGCGAG
GACATGCAAG GTCTGCTGGG CGAACAGCAA TTCTCAACGG CCTCCCTGAT AGCCGCAGAG
ATAGACCGAG AGGTGGCCGA TCGCGTGCAG GCACTAGAGA TCACGGCCAG AGAAATCACC
CCAACCATAA TCAACAACCC GGTGGCCTTG CAAGCATTGT TCGCACATCA GCCGCTGTTA
CATCATTTGT TTAATGATGG CATCGCCTCC ACCGGTCCGA CTGGCACGGT GATTGCCGAT
TATCCTCAGG TGCCAGGGCG GATTGGCGCC AATTTCATGG AGCGCGATTA CATCATCGGC
CCGCTCAAGA ATGGCAAGGC GACGATAGGC AAGCCGGTAC ACAGCAAGCT CACGCAGGAC
CCAAGTTTTG TGATGGCGGT ACCCATCAAA GATACTGCGG GACGGGTCAT TGGGGTGCTG
GCCGGCATCA TCAACCTGAA CAAGCCCAAT TTTGTGACGA CAAGCACAGG CGGCTATGAC
AGCAAGGGTG GCGACTTTTT TTTGGTGGCA CCGCAGCACC AGATCGTTGT CGCCAGCTCC
AACAAAAGCC GCATCTTGGC AACGTTGCCT GCCCCGGGCG TCATCCCCGC GCTCGACCGC
CAGGCGCAAG GGTATGAGGG GACTCAAATC TTCGTCAATC CGCTGGGGTT TGAGGTGCTG
ACCTCGGCCA AGCAGATACC GTCCGCTGGC TGGTACATTG CCATCACGCT AGACACCAGA
AGAGCTTTTG CCCCGATTAA GGTTATGCAG CAGAACATGC TGCTCGCGGC CTGCGTGCTG
ACCCTCCTCG TCACCGGACT CCTGTGGGAG ATGTTGCGCC GTCAACTGAC GCCATTGCTT
GCCACTGCCA AGGCACTCGC CCGCATGGCC GATTCGAAGG AATTCCCGAG CGCCTTGCCG
ATTGCCCGAC ACGATGAAGT GGGCCACCTG ATTGGCGGGT TCAACCAACT GCTGGTTTCA
TTGCACGAGC GCGATGCCGC ACTGAGTGAG AGTGAGGCCC GCTTTCGCAC CCTGATCGAA
TGGACGCCTG AAGCGGTCGC TGTGCACCGC GGTGGGAAAT TGCTTTACGC CAATCCGGCA
GCCCTTCATA TGTTTGGCGC AACATCCAAG CAAGACCTGG TGGGAAAACC CATGCTCGAG
TTTGTTCACC CGGACTATCG GCACAGTGTG GTGGAGCGGA TGCAGCGCAG TTACGACAAA
AACCTCCACC CGCCCATGGC GGAAGAAAAA TTCCTCAAAC TCGATGGCAC TGTGATTGAT
GTGGAAGTGA CGGGCATCGT GATCAATTAC GATGGCCAGA GCGCCACTCA GGTGGCAATA
CACGACATCA CCGAGCGCAA ACTTGCAGAA GATCAGTTGC GCACCCTCTC ACACATTGTC
GAGCAGGCGC CGTTATCCAT TCTTATCACT GATCTCGATG GCAACATCAA ATACGCCAAC
CCCTGGATTA CGAAGGTCAC CGGCTACAGC GCTGAAGAAA TCTGTGGTCA AAACCCGCGC
CTTTTCAAGA CTGACCAGAC ACCGCTCGAG GTCTATCAGG ATTTGTGGCA AACCCTGCGC
GCCGGGGGTG TGTGGCGCGG GGAATTTGGC AATCGCAAGA AGAACGGCGA CGTGTTCGTG
GAACAGGCTG TGATTGCCCC GGTGTTGGAC GATGCTGGTC GCACGGCCCA CTACGTTGCA
CTCAAAGAAG ACGTCACAGA ACGCAAGCGC ACAGAGCGTG CCCTGCAGAC CTCCTTGCAA
GAAAAGGTGG CACTGCTCAA CGAGGTGCAT CACCGCGTCA AGAACAACTT GCAGGTCATC
ACCAGCCTGC TGCGTCTTGA AGCCGGGCGC AGCAGCCAGC CTGACACCAA GTCGGTGCTC
ACAGACATGC AGGGTCGCAT CCGGTCCATG GCGCTGTTGC ACGAGTCGCT GTACCGCACC
GGCACGTTTG CCTCGGTGGA TTTGGGCGCT TACCTCAAAC AGCTCGCCAG CCAGACCTTT
CGGGCGCAAA GCAGTGGCGC CGTGCGGCTG GAATTGGAAC TGGCGACCGT TCAAGTCAGC
ATGGACCAGG CCACGCCATG CGGTTTACTG GTCAACGAGC TCATCAGTAA CTGCCTCAAA
CACGGCTTTC CTGAGGGCCG CAGTGGTGAA ATCCGCATAG AACTACATGC GATGGCAACG
GCAACTGTAG CGCCAGCAAC CGAGGGTGGC GCGGCGCAGT GGCTGCTGCG CGTGAGCGAC
ACCGGCGTTG GCTTGCCAGC CGACTTTAAG GCCAGGCGCC ACCAGTCACT TGGCCTGCAA
CTGGTGGCCG ACTTGGTCCA CCAGCTCGGC GGCACACTGG ACATTGGGTC GGCACCTGGC
GCAGTGTTTA CTGTGGTGTT CACACCGGAT GCGCCAAGCT CAACAATGGG TGCGGTCTGA
 
Protein sequence
MRRFKFEWNS LKTRVTLLTL GIFVISIWSL TFYTGRMLRE DMQGLLGEQQ FSTASLIAAE 
IDREVADRVQ ALEITAREIT PTIINNPVAL QALFAHQPLL HHLFNDGIAS TGPTGTVIAD
YPQVPGRIGA NFMERDYIIG PLKNGKATIG KPVHSKLTQD PSFVMAVPIK DTAGRVIGVL
AGIINLNKPN FVTTSTGGYD SKGGDFFLVA PQHQIVVASS NKSRILATLP APGVIPALDR
QAQGYEGTQI FVNPLGFEVL TSAKQIPSAG WYIAITLDTR RAFAPIKVMQ QNMLLAACVL
TLLVTGLLWE MLRRQLTPLL ATAKALARMA DSKEFPSALP IARHDEVGHL IGGFNQLLVS
LHERDAALSE SEARFRTLIE WTPEAVAVHR GGKLLYANPA ALHMFGATSK QDLVGKPMLE
FVHPDYRHSV VERMQRSYDK NLHPPMAEEK FLKLDGTVID VEVTGIVINY DGQSATQVAI
HDITERKLAE DQLRTLSHIV EQAPLSILIT DLDGNIKYAN PWITKVTGYS AEEICGQNPR
LFKTDQTPLE VYQDLWQTLR AGGVWRGEFG NRKKNGDVFV EQAVIAPVLD DAGRTAHYVA
LKEDVTERKR TERALQTSLQ EKVALLNEVH HRVKNNLQVI TSLLRLEAGR SSQPDTKSVL
TDMQGRIRSM ALLHESLYRT GTFASVDLGA YLKQLASQTF RAQSSGAVRL ELELATVQVS
MDQATPCGLL VNELISNCLK HGFPEGRSGE IRIELHAMAT ATVAPATEGG AAQWLLRVSD
TGVGLPADFK ARRHQSLGLQ LVADLVHQLG GTLDIGSAPG AVFTVVFTPD APSSTMGAV