| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0790 |
|---|
| Symbol | |
|---|
| ID | 3964208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 827401 |
|---|
| End bp | 827979 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637915620 |
|---|
| Product | peptidase A24A, prepilin type IV |
|---|
| Protein accession | YP_522071 |
|---|
| Protein GI | 89899600 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACCATCG GATTTTTATG CCCATCGATT GCCATCATGA TCCACACGCT GCTCGCCGTA
ATGTTGCTCA CTGTTGTCAT TGCTGACCTG CGGTCGCGCC GCATCCCTAA TACGCTGGTG
CTCACGGGCC TTGTCCTCGC GTTCATCGCC CATACCATCG CACTGGCCTC GGGCTCTGTG
CCTCTCGCTG GCTCCACTTG GTGGGCACCC TTGGCCGGGC TGCTGACCGG CCTGCTGCCG
CTAATGCCGC TGTATTTCCT GCACGCAACA GGTGCAGGCG ATGTCAAGTT GATGGGCATG
GTGGGCGCCT TCGTCGGTGC TCCGACGGTG CTCTCAGCCG TCCTCTACAC CCTTGTCGCC
GGCGGCCTGC TGTCGCTGGT CTTTATGCTC GGCCGCGGCG TGGCGGCGCA GACGCTGGCC
AACGTGCGTT TTCTGCTGAC CGACTGGGCG CTGCGCGCCA GCAGCGGCCA GGGTGCGCGC
CTCGCGCCAC TGCAAACCAC AGCCGCTCGT CTGCCCTATG CCGTGGCCAT CGCGCTGGGC
ACTGGCGCCG CCTTGCTCTG GCCCCTCGCC ACACCCTGA
|
|---|
| Protein sequence | MTIGFLCPSI AIMIHTLLAV MLLTVVIADL RSRRIPNTLV LTGLVLAFIA HTIALASGSV
PLAGSTWWAP LAGLLTGLLP LMPLYFLHAT GAGDVKLMGM VGAFVGAPTV LSAVLYTLVA
GGLLSLVFML GRGVAAQTLA NVRFLLTDWA LRASSGQGAR LAPLQTTAAR LPYAVAIALG
TGAALLWPLA TP
|
|---|
| |