| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0572 |
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| Symbol | |
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| ID | 3960721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 593580 |
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| End bp | 595175 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637915402 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_521854 |
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| Protein GI | 89899383 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0931268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGACT ACATCATTGT TGGCGGTGGC TCGGCTGGTT GCGTGCTGGC CGCACGGCTG
AGCGAAAACC CGGAGATCAC GGTGGCCCTT CTTGAGGCGG GCCCCGTCGA CAGCAGCGTG
CTGATCCACT GTCCCGCCGG GCTCGCCCTG ATGGCACAAA CGGGCCAGGC CAACTGGAAG
GTGGCGTCGG TGGCGCAACC CGGCCTCAAT GGCCGCCAAG GCTATTCGCC GCTAGGCAAG
GTGCTGGGCG GTTCCAGCTC AATCAACGCC ATGATTTACA TCCGCGGTCA GCGACAGGAT
TACGACCTTT GGGCGGCCGA AGGTAACGCC GGTTGGGCTT ATGACGATGT GCTGCCCTAC
TTCAAACGGG CTGAACACAA CGAGCGGGGC GGGGACGCTT TTCATGGCAG TGATGGCCCG
CTCAACGTGA TGGATCTGCG CTGCCCCAAC CGGTATAGCC CGGCGTTTGT ACAGGCCGGT
CAACAAGCGG GCTATGCGCA CAACACTGAC TTCAACGCCG CCACCCAGGA AGGCGTGGGC
ATGTACCAGG TGACACACAA GAACGGTGAG CGTTTCAGCG CCGCCAAAGC CTATCTGACG
CCCAACCTCG CACGCCCCAA CCTGCAGGTA TTTACCGGCG CCCACACCAC GCGCATTCTG
CTGGAGCACA AACGCGCCGT CGGCGTGGAG TTTCAGCACG AGGGCCAAGT CAAGCAACTC
AAAGCCAGTC GCGAAGTGCT GCTGTGTGCG GGTGCGCTGC ATTCACCCCA GATTCTGATG
CTCTCAGGCA TCGGCGAACA TGCCCACCTG GTCGGAATGG GCATCGCCAC GCAACACAAC
CTGCCTGGCG TCGGCCAGCA CTTGCACGAC CACGTTGACG TGGTGTTGGT CGTGAATGCA
CCAGGCGCCA AAGATCTTTT TGGCATCTCC CTGACGGGCA TGCGGCACCT CATCAAAGGC
ATTGTGGATT GGCGCCAGCA CCGCAGCGGT ATCCTCACCA CAAATTTTGC CGAAGCGGGT
GGCTTCATCA AGAGTCAGCC GATTGAGGCA ACACCCGACC TCCAGCTGCA CTTTGTGATT
GGCAAGCTGA TCAACCACGG CCGCACTGTC GTCTTTGGCC ATGGCTTTTC TTGTCACGTG
TGCCTGCTAC GCCCGCGCAG CCGGGGCAGC GTCAAACTGG CCAGCAAAGA CCCGCTTGCC
ACGCCCCTGA TCGACCCCAA TTTTCTGGGC GACCGCGATG ACATGGACCG CATGGTGCGC
GGCTTCAAGC TGGCACGCCG GATTCTGGCC CAACCGGCCC TGGCAGCCCT GGGCGGACGG
GAACTGGAAG CGTCGATCCA CGCCCAAAGT GACGCCCAGA TCGAACAGTT CATTCGCGAC
CACGCCGACA CGATTTACCA CCCGGTGGGC AGTTGCCGCA TGGGTAATGG CCCCCTGGAC
GTGGTGGATG CGCAGTTGCG GGTGCGCGGG CTGGAAGGCC TGCGCGTGGT GGATGCCTCC
ATCATGCCCA GCGTGGTCAG CGGCAACACG AACGCACCGG TGATCATGAT TGCCGAGAAG
GCGGCCGACA TGATCAAAGC GGCGCAAGTG CTTTGA
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| Protein sequence | MFDYIIVGGG SAGCVLAARL SENPEITVAL LEAGPVDSSV LIHCPAGLAL MAQTGQANWK
VASVAQPGLN GRQGYSPLGK VLGGSSSINA MIYIRGQRQD YDLWAAEGNA GWAYDDVLPY
FKRAEHNERG GDAFHGSDGP LNVMDLRCPN RYSPAFVQAG QQAGYAHNTD FNAATQEGVG
MYQVTHKNGE RFSAAKAYLT PNLARPNLQV FTGAHTTRIL LEHKRAVGVE FQHEGQVKQL
KASREVLLCA GALHSPQILM LSGIGEHAHL VGMGIATQHN LPGVGQHLHD HVDVVLVVNA
PGAKDLFGIS LTGMRHLIKG IVDWRQHRSG ILTTNFAEAG GFIKSQPIEA TPDLQLHFVI
GKLINHGRTV VFGHGFSCHV CLLRPRSRGS VKLASKDPLA TPLIDPNFLG DRDDMDRMVR
GFKLARRILA QPALAALGGR ELEASIHAQS DAQIEQFIRD HADTIYHPVG SCRMGNGPLD
VVDAQLRVRG LEGLRVVDAS IMPSVVSGNT NAPVIMIAEK AADMIKAAQV L
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