| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0548 |
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| Symbol | |
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| ID | 3960736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 572159 |
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| End bp | 573778 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637915378 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_521830 |
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| Protein GI | 89899359 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTT TGCAGGATCC GATCCGCGAC GGATTAAAGC GTGGCTGGAA GGTGCTGGGC
GGCGCGCACG GCGCACGGCC CGAAAAAATG GTCTGCGATG TGGCCATCAT CGGCTCGGGC
GCCGGCGCCG GTATTAGCGC CGAGCTGCTG GCGCGCGCGG GTTTGCGGGT CGTGATCATT
GAAGAGGGGC CGCTCAAGAG CAGCAGCGAC TTCAACCAGA AGGAGGCAGA AGCCTACCCC
GCGCTGTACC AGGAGAGTGC CGGCCGCAAA ACCTCTGATA AGGGCGTCAC GATTTTGCAG
GGGCGCTGCG TGGGTGGCTC CACCACCGTC AACTGGACCA GCTCATTTCG AACGCCGCTG
GATACCTTGA GTTATTGGCA GCAGAAGTTT GCGCTGCCTG ACTACACCAA CGATGCCCTG
GCGCCCTATT TCCAGCAGGC CGAGACCCGG CTCAACATGG GTCCATGGCT GGTCGCGCCG
AATGAAAACA ACGACTTGTT GCGCCGCGGT GCGGCCAGGC TCGGCATCCC GGCGGCGGCG
ATTGCCCGTA ACGTCAAGGG CTGCTGGAAC CTGGGCTCCT GCGGCATGGG CTGCCCGACC
AATGCCAAGC AGTCGATGCT GGTGACCACG ATTCCCGCTG CGCTGGACTT GGGCGCCACG
CTGCTGGTGG AAACCCGGGC CGAACAGTTC GAACTGGTCA ATGGGCGCCT GCGGTCGGTC
CGTTGCATTG CAGTTAAACC CAATGGTGCC CCCGTCGAAT CAGGTGTTAA CGCTACAACA
ATAGTAGCGA AGCATTTTGT ACTGGCGGCT GGCGCGATCA ACTCGGCGGC CTTGCTGCTG
CGCTCCAACG CGCCCGATCC GCACGGGCGC CTGGGTCGGC GCACCTTCTT GCATCCGGTG
GTGATGTCGG CGGCGATCAT GAGTCAGAAG GTGCAGGCTT GGGCCGGCGC ACCGCAAACC
ATCTATACCG ACCATTTTCT CGGCACCCAG CCGATTGACG GTCCGATTGG CTTCAAGCTC
GAAGCGCCGC CGCTGCACCC GGTCATCTTT GCCTCCACGG TGTTCGGTTG TGGCCAGGAG
CAGGCCGCGA TGCTGGCGCA GTTTCCCCAC ACCCATGTCC TGCTGGCGCT GCTGCGCGAC
GGATTCCATG AAGAAGCGGC GGGCGGCCAG GTCAAGCTGC GGGGCGACGG GTCGCCCGAG
CTGGACTACC CGCTGACTGA CTTTGTCATG GCCGGGGCGC GGCGTGCCCT GCTGGCCATG
ATGGAAATCC AGTTTGCCGC CGGTGCCCGG CAGGTGTTGC CGATGCACGA GTCGGCCCGG
CCCTGCAACA ACTGGACCGA GGGCCGGCAG GCGGTAGCGG CACTGTCCAT GCAGCCGCTG
CTGACCAAGG TGGTGAGTGC CCATGTGATG GGCGGCTGCG GCCTGGCCGG CACGGAGGCC
CTGGGCGTGA CGCGCCCGGA CGGCGTGCAT TGGCAGTTGG ACAATCTGTC CATTCATGAC
GGGTCGATCT TCCCGACCAG CATTGGCGCC AACCCCCAAT TGTCCATTTA TGGCATCGTC
AATCGTTTGG CGCAAGGGCT GGTCAAACGG CTCACGGGGC AGGATCTGAG CCTGGCGTGA
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| Protein sequence | MSSLQDPIRD GLKRGWKVLG GAHGARPEKM VCDVAIIGSG AGAGISAELL ARAGLRVVII
EEGPLKSSSD FNQKEAEAYP ALYQESAGRK TSDKGVTILQ GRCVGGSTTV NWTSSFRTPL
DTLSYWQQKF ALPDYTNDAL APYFQQAETR LNMGPWLVAP NENNDLLRRG AARLGIPAAA
IARNVKGCWN LGSCGMGCPT NAKQSMLVTT IPAALDLGAT LLVETRAEQF ELVNGRLRSV
RCIAVKPNGA PVESGVNATT IVAKHFVLAA GAINSAALLL RSNAPDPHGR LGRRTFLHPV
VMSAAIMSQK VQAWAGAPQT IYTDHFLGTQ PIDGPIGFKL EAPPLHPVIF ASTVFGCGQE
QAAMLAQFPH THVLLALLRD GFHEEAAGGQ VKLRGDGSPE LDYPLTDFVM AGARRALLAM
MEIQFAAGAR QVLPMHESAR PCNNWTEGRQ AVAALSMQPL LTKVVSAHVM GGCGLAGTEA
LGVTRPDGVH WQLDNLSIHD GSIFPTSIGA NPQLSIYGIV NRLAQGLVKR LTGQDLSLA
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