Gene Rfer_0506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_0506 
Symbol 
ID3963806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand+ 
Start bp525352 
End bp526302 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content58% 
IMG OID637915337 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_521789 
Protein GI89899318 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.309351 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCCTG TAACCCCTTC CATGTCCGAC CGCGACGGCA AAATCTGGAT GGATGGCCAG 
ATGGTCGACT GGCGCGACGC CAAGATCCAT GTGCTGACGC ATACCCTGCA TTACGGCTGC 
GGCGTTTTTG AAGGTGTGCG CGCTTACAAC GCCGTCGGCG GCACCGCAAT TTTCCGGCTC 
GAAGATCACA CCGAACGCCT TTTCAACAGC GCCAAGATCC TGCGCATGAA GATCCCGTTC 
AGCATGGACG AGGTGCTGGC GGCGCAAAAG GCGGTGGTGC GCGAGAACAA GCTGGAGGGC 
GGCTACATCC GTCCCTTGAG CTGGATTGGC GACGAGAAAT TGGGTGTGAG CCCCAAAGGC 
AACACCATTC ACCTGATGGT GGCGGCCTGG CCCTGGGGTG CGTATCTCGG CGAAGAAGGC 
ATGAAACGTG GCATTCGGGT CAAGACCAGC AGTTTTACCC GCCACCACGT CAACATCACC 
ATGACGCAGG CAAAGGCGGT GAGCAACTAC AGCAACTCGA TCCTGGCCAA CCTGGAAGTC 
ACCGACGAAG GTTACGACGA GGCCCTGCTG CTCGACTGCT CGGGCTTTGT GTCGGAAGGC 
CCGGGTGAAA ATATTTTCGT CGTCAAAGAC GGCGTGGTTT ACACGCCGGA TCTGTCGTCC 
GGCGCACTCA ACGGCATCAC CCGCAACACC ATCTTCCACA TTGCCAAGGA CCTGGGGCTG 
GAACTGATTC AAAAACGTAT CACCCGTGAT GAGGTTTATA TCTGTGATGA AGCCTTCTTT 
ACCGGCACGG CGGCTGAAGT CACCCCGATT CGCGAACTTG ACCGCATCGA ACTGGGCAAG 
GGTGACTATG TCGGCAGCCG CGGCCCGATC ACCGAAAAAA TCCAGAGCGC CTACTTTGAC 
ATCGTCAATG GCCGCAACCC GAAATATGCC CATTGGCTGA GTAAAGTCTG A
 
Protein sequence
MSPVTPSMSD RDGKIWMDGQ MVDWRDAKIH VLTHTLHYGC GVFEGVRAYN AVGGTAIFRL 
EDHTERLFNS AKILRMKIPF SMDEVLAAQK AVVRENKLEG GYIRPLSWIG DEKLGVSPKG 
NTIHLMVAAW PWGAYLGEEG MKRGIRVKTS SFTRHHVNIT MTQAKAVSNY SNSILANLEV 
TDEGYDEALL LDCSGFVSEG PGENIFVVKD GVVYTPDLSS GALNGITRNT IFHIAKDLGL 
ELIQKRITRD EVYICDEAFF TGTAAEVTPI RELDRIELGK GDYVGSRGPI TEKIQSAYFD 
IVNGRNPKYA HWLSKV