| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0442 |
|---|
| Symbol | |
|---|
| ID | 3962854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 448413 |
|---|
| End bp | 449267 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637915273 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_521725 |
|---|
| Protein GI | 89899254 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATG CTGCCCTCAC TTCCGGATCC GTTGCCGTCA TCACTGGCGG CGCTGCCGGT
ATCGGCCTCG CCGCTGCCAA GCGGATGGCG CAGCTCGGAC TTCGCGTCTG CATCGCCGAC
CTCGGCACGG ACCGACTCAT CCGCGCTGCC CAAGAGGTCG TCCTCCTGGC GGCGGGCGGA
ACGGACGACG TGATGACTTT GGAGACGGAC GTTAGCCGCG TCGAAGACCT GCGCCGACTG
GAGGAGGTTG TTCGCGATCG CTTTGGCGGC ACGGATATCC TGATGAACAA CGCTGGCATT
CAGCCCGGCA GCGCCATGTT CGGGCCGGCC GGCAACTGGG AGCGGGTGCT CGACGTCAAC
CTGTGGGGCG TCATTCACAG CACGCAGATC TTCGTGCCCG CCATGATCAA GCGCGGACGC
CCCGGTCTTG TCATCAACAC AGGGTCTAAG CAAGGGATCA CCACTCCTCC TGGCGACCCG
GCCTATAACG TGTCCAAGGC TGGCTTGAAG GCTTTCACCG AAGCGCTGCA GCACGAGCTT
CGCAACACGC CGAACTGTCG GATCAACGCC CATTTGCTGA TTCCAGGTTT CGTTTTCACG
GACCTTACCG CCCAGGGCCG CACAGAAAAG CCGGCCGGCG CCTGGACGCC GGAGCAGACC
GTCGACTTCA TGATGGAGCG GTTGGAGGCC GGCGACTTCT ACATTCTCTG CCCCGATAAC
GACGTGCCTC GTTCGCTCGA CGAGCGGCGC ATCCTCTGGG CTGCGGGCGA TGTCGTCGAG
AACCGGCCAC CGCTTTCGCG ATGGCATCCA GATTACGCGA AGGCGTTCGA AGCCTTCAGT
CAGAAAAAGA GCTGA
|
|---|
| Protein sequence | MTHAALTSGS VAVITGGAAG IGLAAAKRMA QLGLRVCIAD LGTDRLIRAA QEVVLLAAGG
TDDVMTLETD VSRVEDLRRL EEVVRDRFGG TDILMNNAGI QPGSAMFGPA GNWERVLDVN
LWGVIHSTQI FVPAMIKRGR PGLVINTGSK QGITTPPGDP AYNVSKAGLK AFTEALQHEL
RNTPNCRINA HLLIPGFVFT DLTAQGRTEK PAGAWTPEQT VDFMMERLEA GDFYILCPDN
DVPRSLDERR ILWAAGDVVE NRPPLSRWHP DYAKAFEAFS QKKS
|
|---|
| |