| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0380 |
|---|
| Symbol | |
|---|
| ID | 3964282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 389408 |
|---|
| End bp | 390610 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637915213 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_521665 |
|---|
| Protein GI | 89899194 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCA GACACTTTTT TTTGACCCTG ACCGGTGGCC TGTTGGCACT CGGTTTGGGC
GGCTGCACTG CCAAGACCGA CGCGCCAGCG CCGGCGGCCT CCAGCAGTGC GCCAGCCAAG
CCTTCGGCGG CCGCTTTGCC CGCGGTCACC ATCACCACCG TGCGCGCCCA ACAGCGGGAT
CTGCCAGTGC TGTACAGCGC CACCGGCACC GTCATGGCCT TGGCCAGCGT GGACATCAAA
TCCCAGGTCA CCAGCGTTGT GAGCAAGATT CATATCCAGG ACGGGCAATT TGTCAAAGCA
GGAGAGCTGC TGTTCACACT GGATTCGCGC ACCGATGAAG CAAACCTGGC CAAAGCCCGC
GCTCAGCTGG CCAAAGACAG CGCGCTTCGC GCGGATGCCC AGCGCCAGCT GGCACGTGCC
CAACAGCTGT ATTCACAAAA CTTTATTTCA CAAGGCGCTG TCGATACCGC ACAAGCGCAG
CTGGACTCCA TGGCGGCGTC AGTGGTGGCT GATCAGGCCG CCATCGAGGC GGCCCGAGTG
GCGGTCTCCT ACGCCCGCAT CAGCGCGCCC AACGCGGGGC GGGCCGGCGC AGTCAATGTC
TCCCAGGGCA GCGTGGTGCA AGCCAACCTG ACCAGCCTGG TCACCATCAC CCAGCTTGAC
CCGATTGCGG TGGGCTTCAA TCTGCCCCAG CGCACGCTCG CAGATACCCT GTCGGCTCTG
AAGAATGGGG GTGCGGCGGT GAAAGCGACG ATTGCGGATG GGGGTGCCAG CTTCATAGGG
CATCTGAATT TTGTGGATAA CGCCATCGAT TCCAGTTCCG GCTCGGTCAA AGTGAAGGCT
GTTTTTGCCA ACCCGCAGGG CAAGTTGTGG CCGGGCGCTT TTGTTGACAT CTCACAGACC
GTCAACACCC TCAAGGACGC AATCGTGATA CCGCAAGCGA CCATCATTCC GAACGCTCGT
GGCACGATGG TTTATGTGGT GGAGGCTGGC AAGGCCGTCC TGCGCCCGGT ACGGGTTGTC
CTGGCCCAAG GCGATGACGC CGCCGTCACC GGGGTCAAGG CGGGCGAGTC GATTGTGCTC
GATGGCAAAC AGAATCTGCG CCCCAACTCA CCGGTGCTTG AGCAGGCGCG CGCGCCCGCG
GGAGGCGCAT CGGGGCCGGC GGGCGGTGCG GCGGCGAGCC AACAGCGCCC GACTGCATCA
TGA
|
|---|
| Protein sequence | MNARHFFLTL TGGLLALGLG GCTAKTDAPA PAASSSAPAK PSAAALPAVT ITTVRAQQRD
LPVLYSATGT VMALASVDIK SQVTSVVSKI HIQDGQFVKA GELLFTLDSR TDEANLAKAR
AQLAKDSALR ADAQRQLARA QQLYSQNFIS QGAVDTAQAQ LDSMAASVVA DQAAIEAARV
AVSYARISAP NAGRAGAVNV SQGSVVQANL TSLVTITQLD PIAVGFNLPQ RTLADTLSAL
KNGGAAVKAT IADGGASFIG HLNFVDNAID SSSGSVKVKA VFANPQGKLW PGAFVDISQT
VNTLKDAIVI PQATIIPNAR GTMVYVVEAG KAVLRPVRVV LAQGDDAAVT GVKAGESIVL
DGKQNLRPNS PVLEQARAPA GGASGPAGGA AASQQRPTAS
|
|---|
| |