| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0231 |
|---|
| Symbol | |
|---|
| ID | 3960137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 230160 |
|---|
| End bp | 231443 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637915066 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_521519 |
|---|
| Protein GI | 89899048 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCAGC CAAACTGTTC GTCACTTTGG GCGAGTACCG CAGCACCTGA CATTGAAGCA
AGCGCGCTGC AGGGGACAGT GCCGGCCGAC GTGGTTATTG TCGGCGCAGG GTTCACTGGT
TGTGCCGCTG CGCTGGCAAT GGCACAGCGC GGTGCCCGGG TCCGACTTCT CGAAGCGAAC
GTTGTCGGGT GGGGTGCCTC GGGCCGAACC GGCGGACAGG TGATACCGGG TTTGAAATTC
GATCCGGACG AGATCGAGGC CATGTTTGGG CCCGACCTCG GTCCACGCAT GGTGAATGCG
GTCGGTAGCG TCGGAGACGA AGTTTTCGGC TTGATTGAAC AGCACGCCAT TTCGTGCGAC
GCACAACGCA AGGGCTGGCT GCAGCCGGCA TTCTCAACAC GTTCCCTGGA TTTGGCCCTA
CGGCGTTGTG ACAGTTGGCA GCGACGAGGT GCCGATGTGG CGCCGGTTGG TCGATCAGAA
ATGGCTCGAT TGCTTGGCAC CGACCATTAC CTGGGTGGAT GGGAAGACCG TCGCGCCGGT
CATGTGCAGC CGATGTCCTA TGTGCGCGGA CTTGCTGGGG CCGCGCAGCG GGCCGGAGCC
GTGATCCACA TCGACTCACC GGCCCTCTCC CTCACTCGTC AGGGCGCGAA GTGGCGGGTG
TCCACCCCCC AAGGGGCAGT CGACGCGGAC CAGGTGCTGC TCGCGACCAA CGGCTATACC
GATGGACTTT GGCCGGGGCT TGCCAGAACG GTTGTGCCAA TGATGAGCTT TCAAGCCGCC
ACCATCCCGA TCTCAGAGGA CTTGGGCAAG AGCATTTTGC CCGAAGGACA TGCCGCTTCA
GACACGCGTC GCTTGTTGTG GTACTTCCGT CGTGACGCTC ACGGGCGGCT CACCATGGGC
GGTCGCGCGC CCTACCGCGA AGATCTCGGT GCGGCTGATG CCGACTATGT CCGCAATGCC
GTCAACCGCT TGTATCCGCA GTTCAAGAAT ACGCCCTTTG AGTTCCATTG GGCTGGCCGT
GTGGCTATGA CACAAGATCA TATTCCGCAT CTGAACCGAC TTGACAACGG GCTTTGGGCG
GCGCTCGGCT ATAACGGCCG GGGCGTGGGC ATGGCTACGC TCTTTGGGCG ATATTTGGCC
GATCTCGCCT CGGGCGTGCC GGCACAGGAC ATCCCCTTCC CGGTGACCTC GATGCGGCCC
ATTCAGGGCT ACCCCTTTAC TCGCCTGGTC GCCCGCGCCC TGGTGAGCTA CTACCGTATT
CGAGATCAGC TCGAAGCGGT CTAG
|
|---|
| Protein sequence | MSQPNCSSLW ASTAAPDIEA SALQGTVPAD VVIVGAGFTG CAAALAMAQR GARVRLLEAN
VVGWGASGRT GGQVIPGLKF DPDEIEAMFG PDLGPRMVNA VGSVGDEVFG LIEQHAISCD
AQRKGWLQPA FSTRSLDLAL RRCDSWQRRG ADVAPVGRSE MARLLGTDHY LGGWEDRRAG
HVQPMSYVRG LAGAAQRAGA VIHIDSPALS LTRQGAKWRV STPQGAVDAD QVLLATNGYT
DGLWPGLART VVPMMSFQAA TIPISEDLGK SILPEGHAAS DTRRLLWYFR RDAHGRLTMG
GRAPYREDLG AADADYVRNA VNRLYPQFKN TPFEFHWAGR VAMTQDHIPH LNRLDNGLWA
ALGYNGRGVG MATLFGRYLA DLASGVPAQD IPFPVTSMRP IQGYPFTRLV ARALVSYYRI
RDQLEAV
|
|---|
| |