| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0140 |
|---|
| Symbol | |
|---|
| ID | 3960549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 143370 |
|---|
| End bp | 144068 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637914977 |
|---|
| Product | phosphonate C-P lyase system, PhnL |
|---|
| Protein accession | YP_521431 |
|---|
| Protein GI | 89898960 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4778] ABC-type phosphonate transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02324] phosphonate C-P lyase system protein PhnL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.154303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTC TCATAGAAAC TCTTTGCCTG TCCAAAACCT TCACGCTGCA CGGGCGCGGC
GGGCTGCAAC TGCCGGTATT TGCCGGCATT GATTTGAGCG TGCACCCCGG CGAATGCCTG
GCCCTGACCG GCCACTCCGG CAGCGGCAAA AGCTCCTTGC TGCGCTGCCT GTACGGCAAC
TACGGCGCCA GCAGTGGCGA GGTGCGCATT CGCCATTCAG GCGATTGGGT CAGCCTGTCC
AGCGCCGCGC CGCGTGAGGT GTTTGAGGTG CGTCGCCGCA CGCTGGGTTA TGTCTCGCAG
TTCCTGCGCG TCATTCCGCG CGTCTCGACG CTCGACATCG TGGCCGACCC GCTGCGTCGG
CTCGGCGTCG GTGCCGAGGA GGCCCGCGCA CAGGCCGCAC AATGGCTCAA ACGCCTGAAC
CTGCACGAGC ATTTGTGGCA TCTGCCACCG GCCACCTTTT CCGGCGGCGA GCAGCAGCGC
GTCAACATCG CCCACGGCAT GATCACCGCC CCGCCGGTGC TGCTGCTCGA TGAGCCCACC
GCCTCGCTGG ACGCCGACAA CCGGCACGTG GTGGTGGAAC TGATTCATGC CGCCCGCGCA
CAGGGCAGTG CCATCGTTGG CATCTTTCAC GACGACGAAG TCCGCGCGGC CGTGGCCACG
CGCTGCTTTG ACGTCGAGCA ACACCGAAAC CCGGTTTGA
|
|---|
| Protein sequence | MTALIETLCL SKTFTLHGRG GLQLPVFAGI DLSVHPGECL ALTGHSGSGK SSLLRCLYGN
YGASSGEVRI RHSGDWVSLS SAAPREVFEV RRRTLGYVSQ FLRVIPRVST LDIVADPLRR
LGVGAEEARA QAAQWLKRLN LHEHLWHLPP ATFSGGEQQR VNIAHGMITA PPVLLLDEPT
ASLDADNRHV VVELIHAARA QGSAIVGIFH DDEVRAAVAT RCFDVEQHRN PV
|
|---|
| |