| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0005 |
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| Symbol | |
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| ID | 3960241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 6309 |
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| End bp | 7871 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637914844 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_521298 |
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| Protein GI | 89898827 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.379493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGCCA AGAAGCCTTT TGAAATTGCC CGTGAAACGC TCAGGCAACT CACCGCACGC
AAGTTGGCTC CAACGCCGAT CAATTACCAG GCTATTTACA ACGAGGTTGC GGGGGTGGCC
ACCGACCCCC CTTTTCCGAC CGACCGCTTG CGCGATATCG CCCAGGCCCT GCCGACAAAA
ACACCCGGGC AGCAAAAGCA GCGTGCTTTG TTGGATTCCG CCATCGGGCA ACTCAACTGG
GACGGCGTAA AGAGCGCCCT CATGGCTTAC GGCGGCTTCA GCCCACCGGC AGCGGACCCG
GCCACGGCCA CGCCATCGAC CGGGCTGCCG ATGCCGGGCG CCAGCGCCCC GGGCGACGTG
AGCGCACCCG CGCTGACCTT TGATTTTTTG CAGCAAATGG CACGGTTGAT TGAGTTCACA
CTGCCCGCAC TCGGTTCCGA TGATGCCCGC TTCAACGAGC AGACCCAGAC CCTGCTCAAA
GCCATGCGCC AACCTGGGGC TGACGTGGTG GCGCTCAAAT TGATGCTGGG CAGCTTTAGC
GACCGTCTTT CCTTTGCCGC GGAAGATCAG GCCGAGATCA AGGTCACGCT ACTCAAGCTG
CTGCACCTGA TCATCGAAAA CATCGGTGAG CTCAGTCTGG ATGATCGTTG GCTCAAGGGC
CAGATTGAGG CCCTGATGAC GGCGTCGACG CCTCCGCTCA CCTTGCGCCG TCTCGACGAC
GTGGAGCGGC GCCTGAAGGA CGTGATCTTC AAACAGACCG AGGCCAAGGG TCGGGCCCTG
GAGGCGCAGG AAGAGATGCG CCAGATGCTC GCCACCTTCA TCGAGCGGCT GTCGCAAATG
ACCGAGTCCA CCAGCGCCTA CCGCGGCAAG CTCGATGACA ACGCACGCCT GATCGAGCAA
GCCAGGACCC TGGCTGAAAT TGCGCCGGTC TTGAAAGAAG TGGTCGGCGC GACCCGCACC
ATGGCCCACG ACAGCCTGAC GGCACGTGAT GAACTGCGTG GCATGCGCGA AAAGGCGCAA
AGCACCGAGG CCGAGCTCGT CAAGCTGCAC CAGGAGCTTG ACCGCGTCAG CTCCCAGGCG
CGGCATGACC CGCTGACCGG GGCACTTAAT CGCAAGGGGC TGGAGGAGGC CGTCAACCGG
GAGGTGTCCA ATGTGCGACG CAAAGAGACG CCGCTGTGTG TGGCCCTGCT GGACATTGAC
AACTTCAAGA AGCTCAATGA CGCCCTGGGT CACGCGAGCG GGGATGTCGC GTTGGCGCAT
CTGGCCACGG TAACGCGTGA GGTCATGCGC CCGCATGACA CGCTGGCGCG CTACGGCGGT
GAAGAGTTCG TGATTCTGAT GCCCGACACC GCCCTGGATA ATGGCATTGA AGCCATGACC
CGGTTGCAGC GCGAGCTGAC CACACGTTTC TTTCTGGCAG GCACCGAGAA GGTGCTGATT
ACCTTCAGCG CCGGTGTGGC GCAACTGGCC ACTGACGAGA CCGGTCAGAG CGCCATCAAG
CGCGCCGACC AGGCCATGTA CCTGGCCAAA CGCGCGGGCA AGAATCGCGT GTTGGGCGCT
TAA
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| Protein sequence | MIAKKPFEIA RETLRQLTAR KLAPTPINYQ AIYNEVAGVA TDPPFPTDRL RDIAQALPTK
TPGQQKQRAL LDSAIGQLNW DGVKSALMAY GGFSPPAADP ATATPSTGLP MPGASAPGDV
SAPALTFDFL QQMARLIEFT LPALGSDDAR FNEQTQTLLK AMRQPGADVV ALKLMLGSFS
DRLSFAAEDQ AEIKVTLLKL LHLIIENIGE LSLDDRWLKG QIEALMTAST PPLTLRRLDD
VERRLKDVIF KQTEAKGRAL EAQEEMRQML ATFIERLSQM TESTSAYRGK LDDNARLIEQ
ARTLAEIAPV LKEVVGATRT MAHDSLTARD ELRGMREKAQ STEAELVKLH QELDRVSSQA
RHDPLTGALN RKGLEEAVNR EVSNVRRKET PLCVALLDID NFKKLNDALG HASGDVALAH
LATVTREVMR PHDTLARYGG EEFVILMPDT ALDNGIEAMT RLQRELTTRF FLAGTEKVLI
TFSAGVAQLA TDETGQSAIK RADQAMYLAK RAGKNRVLGA
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