| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4412 |
|---|
| Symbol | |
|---|
| ID | 3960045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007901 |
|---|
| Strand | - |
|---|
| Start bp | 177490 |
|---|
| End bp | 179232 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637909620 |
|---|
| Product | parB-like partition proteins |
|---|
| Protein accession | YP_516096 |
|---|
| Protein GI | 89885898 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1475] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACGC CAACCATCGC GGGCATTGCC CTGCGCGACT TACACGTTCC GTCTTACAAC
CCTCGTCGTA AGGTTCACGA CGATCAGGAC TGGCAGGACT TTAAAGATAG TCTCAAATCC
AAGGGAGTTC TCCAGGCAAT TCTGGCTCGG CCAGTGCAGG GCAAGAAAAC CCCGTACGAA
GTTGTCGCTG GGCAGCGACG CTTCCTGGGC TCGCTGGAGG TATTCGGTCA AGACTACCAA
ATCCCAGCGC TGATCAAGGT GATGACCGAC GAGGAAGCCG AAGCGGCCTC TGCCGCGGAA
AACCTGCAAC GCGAACCGAT GAGCCCAGCC GAAGAAGCCG AAGCCGCCGC TCGTGAACTA
GCGCGCTGCA ATGGCGATCG CGAGGAAACC GCCAAGCGCA TGAACATGTC GCGGCTCAAA
CTGGACAACC GGTTGAAACT CATGGCATGT TCGCCTCTGG TGCGCCAACG TCTGATTGAG
CGACGGTTGA AACTGGGCGT GGCCGAGATG CTCTCGGGAC TGACCATGGT CAAACAGGAC
GAGCTGGTCA GCCAGTTTGA CAAGATCGGG ATCCCCTCTA TCGAGGATGT CTCGGCGATG
ATTCTGTCTT TGACCAAGGC ACTGCCATCG GCGATCTTTG ATCCTGTCGA CTGTGGCGCC
TGTGCACACA ACAGCGCGCG TCAGCAAGCG ATGTTCGGCA ATATCGGGGA AGGGCATTGC
CTGGACGCGG TCTGCTTCGA CAATAAAACA GAGGCCCAGC TTCAGTTGAC GGTCGACAAA
CTCAAAGACG ACTTTCAGCG CGTGGAAATA GTGCGCCCCG GCGACAACTT CCGTGTGATC
CGTCTTACAC CAGAATCGAT CGGGGAAAGT CAGGCCATTG CCTGCCGCAG CTGCAAAGAC
TTTGGTGCAG CCGTCTCTGC GATGCCCAAC AAGCTCGGCA AGGTCAGTGG CGGGCTGTGC
TACGGGATTG AATGCAACGA GACCAAGGTC AAGGATTTCA AGGCGGCGCA GGAAGCTCTC
AATTCGCCCC CTCCCACAGC AGAAAAGCCA TCCGGGGCTG CTGCCGGCCC CGGCACGCCA
CCCGTTGAAG GCTCCAAAGC CGCCGGCGCA GTCAAGCCTG CCAAGGCCGA AAAGCCCATT
ACCGAGGCAG CCAAGCCAAC TGTGGGGCTC AGCGGCGCGG TACTCGACTT CCGTGATGTG
CTGTACCGCA AGGTAGTCTT CAAGGAACTG GCGGTGAACT CCGAGTTCAA TGCACGTTTT
GTGATGGCCA TCGTGCTCAA CAGCCAGGGA CGCCTGTTCA AAGGCGAGGA AGTCAAGAGT
GTGTTTTTGA AAAAAGGCTG GATGAAGAGC GATTTGTCAG CCTATGGTCT GCGCGATGCG
ATGAAGATCA TGATGGACAT CCCCAAGGAA CATGCACTCA ACATGCTGCC CAATCTGGGG
GCGGTGGCGC TGACAGATTT GACCCGGGCT GAACTCAAGG ATCTCACCAT CCTTGCCAAT
CCCGATCTGG CAAACTACTT CACACTCAAC GATGAGTCCG GCAAGATGCT TCTTGAAAAG
CTGACCAAAA CCGAGATCTG CGCAATTTGC GACGAAATCG GGATTACCGA GAAGATGGGC
AAGACTTTCC GCTCAATTTC CGGTGGCAAA AAGAGCGAGT TCATCAAGCA CATCACTTCG
CTCGTCGATT TTGAGTACAA AGGCAAGGTG CCCAACGTGC TCAGACCCGA GTTCGAAAAG
TAA
|
|---|
| Protein sequence | METPTIAGIA LRDLHVPSYN PRRKVHDDQD WQDFKDSLKS KGVLQAILAR PVQGKKTPYE
VVAGQRRFLG SLEVFGQDYQ IPALIKVMTD EEAEAASAAE NLQREPMSPA EEAEAAAREL
ARCNGDREET AKRMNMSRLK LDNRLKLMAC SPLVRQRLIE RRLKLGVAEM LSGLTMVKQD
ELVSQFDKIG IPSIEDVSAM ILSLTKALPS AIFDPVDCGA CAHNSARQQA MFGNIGEGHC
LDAVCFDNKT EAQLQLTVDK LKDDFQRVEI VRPGDNFRVI RLTPESIGES QAIACRSCKD
FGAAVSAMPN KLGKVSGGLC YGIECNETKV KDFKAAQEAL NSPPPTAEKP SGAAAGPGTP
PVEGSKAAGA VKPAKAEKPI TEAAKPTVGL SGAVLDFRDV LYRKVVFKEL AVNSEFNARF
VMAIVLNSQG RLFKGEEVKS VFLKKGWMKS DLSAYGLRDA MKIMMDIPKE HALNMLPNLG
AVALTDLTRA ELKDLTILAN PDLANYFTLN DESGKMLLEK LTKTEICAIC DEIGITEKMG
KTFRSISGGK KSEFIKHITS LVDFEYKGKV PNVLRPEFEK
|
|---|
| |