| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4402 |
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| Symbol | |
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| ID | 3960016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007901 |
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| Strand | - |
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| Start bp | 167251 |
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| End bp | 169119 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637909610 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_516086 |
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| Protein GI | 89885888 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATGGTG CCCTCGGCGC CGCGCCTGCG GGAACCATAG GCAACTCTGA TCCCAGCAGC
GTCATTGACC TAGACACTGA ATTTGAAGAC GCGTTCATCT ACCGTCCGGT GCAAAGCGGG
GGCGACCGCC TGCCTGACAA GATGATCAAG TCGTTGTCGT TGACGGATAC CGCGATTCTG
GATGCATTGC GGCTGCTGAT AAAAGACACG CCCGTTAGTT TGTCGATGAT GAACGCAGCG
AACCAGAATT CAACGGTCAA TGGAACAGTC ACCGCTTACA ACCTCAGTGG CAACCTGCCC
GACGTGGTGG AAAAGCTATC CAATTCTGCG GGTTTTTACT ATCGGTACTC CCAAGGTACG
CTCAATATCT ACCCTGACGA ACAGTTCGTG GTTTCCCTGC CGCCCATCGT CAATGAAGAT
GTTTTTGCGG GTATGGCCAA TACCATCGTG AAACTCGGTG CATCGGACGC ATATTTGGAC
CGCCAGGGCA GGTCTCTGAC GTTTCGCGCC AACCGGTCGG CCATGCGAGG GATTGACAGA
TTTCTCGAAA ATGTGAGAGA GACGCGCAGC CTCATCGTCT TCGATACCTA TATTTACGAA
GTCAATCTGA CCGATGGCGC TCAAACAGGA ATCAAGTGGA ACAAACTGGC AATGGCCATC
GGCCCGGGGG GCTCTCTGGG CGCTCTTGGC GCTGTCGGGG GGAGCACAGT CGCAGACTCG
GGAGGCATGG GCTTCTCGGC GATCTACAAG GGGTCGCGAT TTGACCTTGA CGCGTTTTTC
TCATTCTTGC AGACGCAAGG TAATGTCAAA ACCATTGCCC AGCCGAAGAT TGCAATCATG
TCGGGATCAA AAGGCGGGTT TAAGGCAGGT TCGACCACCA AGTACGTTTC CCAGGTCGGC
ACCAATTCCA GTACCACGAT CAATCAAACC ACAGTCAGTA CCGACACCGC TGTCTCCGGG
CTGGACCTGT CTCTGACGGG CGATGTATCG GATGGCACCG TCTACGCGCG GATTCGCATC
TCCCTGTCCG AACTCATCCG CTTCAACTCA TTTGAGGCAC TTGGAACGTC ATTGCAGCTG
CCACAGACCA CCTCACGCGA ATTGACCACT GCGATACGTG CACGCCCAGG CGATGTGGTG
CTCCTGGGCG GCGTGAACAA CAGCAGCGAG TCATCGGACT ACTCGGGCTT GCCGGGTGAA
AAGGGGCAAA TGCTGGTGCC AACAAGTTCA AATAAAAAAG TGGCGCGCAC TGAACTGGTT
ATGGTCATGA AGCCAAAAAT CGTGCGATTT TCAAATCCGC AAAGGGAAGC CGAAAAATTG
GCTCGGAAGA TGTTCGAGCA AAGCCAGGTC CGCGCTGTGG CCGACGTGAA AGTGCCCGTA
CAGTTGGTGG AGCTCCAGGC CGTGCGGCCA GCGCCGATAC GACCTGCGAT CCTGCCGGCC
AATTTGATCA ATCCTGTCAA AGCCAGGGTT GAACCGAATG CCCCACCGGT GGAAATAGCT
GCCCAGGCCA TTGCCGAACC CGCGCCGGTC AATAAAGACA GGACTCCACC GAAAGCGAAT
CCATCCCAAA CCAGGGTTGC CGACGTGAGT CCGGCGGTGA GCGTGCAGAC CGGCAACCTA
ACCGTGACTG ATCCGGTCCA TGGCCAACGC GAGATGGCAG TTTCCGTAGG ACAGGCGGCC
CAACAACCTC AAGAGCAGGC GCAACCAGCG CCGCGTGCAC GGGCTCCCAT TGCCGGCGAG
GCGATATCGG CCGTGCAAAC AGCCTCGAAC AAGGATGGAA GTCTGGTCGT ACAGGTAAAG
TCAGGCGACC ATTTGGTAGC TGAAGTCAAT CTCAAGCAGC CACAGAGTGG AGAGAACAAC
AATGATTAA
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| Protein sequence | MHGALGAAPA GTIGNSDPSS VIDLDTEFED AFIYRPVQSG GDRLPDKMIK SLSLTDTAIL
DALRLLIKDT PVSLSMMNAA NQNSTVNGTV TAYNLSGNLP DVVEKLSNSA GFYYRYSQGT
LNIYPDEQFV VSLPPIVNED VFAGMANTIV KLGASDAYLD RQGRSLTFRA NRSAMRGIDR
FLENVRETRS LIVFDTYIYE VNLTDGAQTG IKWNKLAMAI GPGGSLGALG AVGGSTVADS
GGMGFSAIYK GSRFDLDAFF SFLQTQGNVK TIAQPKIAIM SGSKGGFKAG STTKYVSQVG
TNSSTTINQT TVSTDTAVSG LDLSLTGDVS DGTVYARIRI SLSELIRFNS FEALGTSLQL
PQTTSRELTT AIRARPGDVV LLGGVNNSSE SSDYSGLPGE KGQMLVPTSS NKKVARTELV
MVMKPKIVRF SNPQREAEKL ARKMFEQSQV RAVADVKVPV QLVELQAVRP APIRPAILPA
NLINPVKARV EPNAPPVEIA AQAIAEPAPV NKDRTPPKAN PSQTRVADVS PAVSVQTGNL
TVTDPVHGQR EMAVSVGQAA QQPQEQAQPA PRARAPIAGE AISAVQTASN KDGSLVVQVK
SGDHLVAEVN LKQPQSGENN ND
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