| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4400 |
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| Symbol | |
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| ID | 3960014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007901 |
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| Strand | - |
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| Start bp | 164830 |
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| End bp | 166557 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637909608 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_516084 |
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| Protein GI | 89885886 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAACG CCCTGCATAT TGTCGAAACG CCAGCGCTGG CTGTGCCATT GCGCACGGGG
GAGATTTTGA TCCGGGACGG GGTCATTACG CGCCATCAAT TGGAGATTGC GCTAAAACAA
CAACGGGTAT GGCGAAACTC CGGAAGAATT ACGCCAATCG GCGAAATTCT GCACGAGTTG
CGTTTTGCCG ATCGCGCCGC CATCGAAAAT GCGGTATTGA TGACAGCCGG CTCCACGACT
GGCATTTTTG AGGTCTTGCT GTCATCCGTC ACCTGTATGC GCTATCGCGT GCACCCCATT
CGCATGGATG GAGAAACGTT GGTCATTCAG TCTAGGCAGC GTCTGAGTGA TCGGGAAAAG
CAGCGCATTC TGGATGCATG CCATGTGTCG GCCAAGTACC TGAAAGTCGT TGCAGCTGAT
CACCAGGCCA TAGCTTCGGC GCTTTCGATG CATGAAAAGC AGGATTCTTC CCTCGACATC
TGGATCAGAC GCTTGCAGCA CGACCCATCG GGCTATGTGC TCAAAGCGTT CATGGGGCAC
ATGATCGGGG AGGCATCTCA ACGGGATGCC TCCGATATCC ATCTAGACCG CAAGGACGAC
GTCCACTCGT GGATTTCCTA CCGCATAGAT GGCGATATGA GCCAGATGTA CATGCTGCCG
TCCAAATTGA TGGCCGCCAT CATCGTGCGC ATCAAAACGG AAGCGGGCAT GGACGCATCA
TCTACCCAGC GTCCCCAGGA CGGGCGCATC AGTCTTGATT CGCGCCACCA AAAACTTGAC
ATCCGGGTCT CCTCGCAACC CATCGCAGGG GGTGAGACGA TTGCACTTCG ACTGCTCAGC
TCGGACTCCA TCAAGTCTTT GAACATCTTG TTTCCGCAGC AGCCTGAACT GATTGCGCAC
CTCAAGAAGC TGACCCGTGT TGATTCAAAG ACGGGTGGGT TCATTTTGAT TTCCGGCGCG
ACTGGAATGG GGAAGTCCAC CACGTTATAT GCGTTGTTGC AAGAACTCGA CAGGGACCGA
CTCAACGTCA TGACGGTTGA AGACCCTGTG GAATATCAGT TGGCGTTTCT CAGGCAGATC
CAGCTCAATC AGTTTTTGGG CGAGCAAGCT ACGGATATGG AGAGATCACT ATTGCGTCAG
GACCCGGATG TGCTCGTATT TGGCGAAATG CGCGACGAGA ACTCGACAAT TGCCGCATTG
CGCCTGGCTG AATCGGGCCA CCTGGTGATC TCTACCATTC ACGCCAATGA CGCGGTACAG
ACGTTCGAGC GGCTTGCCAA TAAAGTGGGC GAAGCAAACC GCGATGACAT GCTCTACATC
CTGGGCAGCT ATCTCAAGGC GATTATTGCC CAGCGCCTGA TCAAGAAGCT GTGCCTTTGC
GCGCGCCCCG CCACACCTGA ATATCGTTCG CTTCATGCAC AGACCGCGGC GGATTTGGGC
ATCAGCGATG AAGCCACTGG TTTGCTGGAG CCAGGAAAAT GCAAGGCATG CAACAACACG
GGGTACCGGG GGCGCGTCAT GCTGCACGAG ACCTTGCTGA TACCCGATGA CGATCTTGTT
CGCAAAAATT TGCTCACGGC GATCACGTCC CCTAACGGTT TCTCATCAAT CTTGGACGTA
CCGGGTGTGA AACACATTGC CCGCACGGAT ACCCTGCGCA CGCTGGTTTC ATCCGGTGTG
ATTCCTCTGG GGTTTGCAGC GCTTCAAATG GGGGTATCAG CATCATGA
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| Protein sequence | MSNALHIVET PALAVPLRTG EILIRDGVIT RHQLEIALKQ QRVWRNSGRI TPIGEILHEL
RFADRAAIEN AVLMTAGSTT GIFEVLLSSV TCMRYRVHPI RMDGETLVIQ SRQRLSDREK
QRILDACHVS AKYLKVVAAD HQAIASALSM HEKQDSSLDI WIRRLQHDPS GYVLKAFMGH
MIGEASQRDA SDIHLDRKDD VHSWISYRID GDMSQMYMLP SKLMAAIIVR IKTEAGMDAS
STQRPQDGRI SLDSRHQKLD IRVSSQPIAG GETIALRLLS SDSIKSLNIL FPQQPELIAH
LKKLTRVDSK TGGFILISGA TGMGKSTTLY ALLQELDRDR LNVMTVEDPV EYQLAFLRQI
QLNQFLGEQA TDMERSLLRQ DPDVLVFGEM RDENSTIAAL RLAESGHLVI STIHANDAVQ
TFERLANKVG EANRDDMLYI LGSYLKAIIA QRLIKKLCLC ARPATPEYRS LHAQTAADLG
ISDEATGLLE PGKCKACNNT GYRGRVMLHE TLLIPDDDLV RKNLLTAITS PNGFSSILDV
PGVKHIARTD TLRTLVSSGV IPLGFAALQM GVSAS
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