Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_4327 |
Symbol | |
ID | 3959863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007901 |
Strand | + |
Start bp | 88990 |
End bp | 92502 |
Gene Length | 3513 bp |
Protein Length | 1170 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637909534 |
Product | hypothetical protein |
Protein accession | YP_516011 |
Protein GI | 89885813 |
COG category | [V] Defense mechanisms |
COG ID | [COG1002] Type II restriction enzyme, methylase subunits |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAAA AGAATACAAC AGCGGCGTTC ATTAAAAGCT GGCAGGGAGT TGCAGCAAGC GAACTGGCCA CCGCTCAGAG TTTCGTCATG GACTTTTGCG AGTTACTGGG GGTCGCAAAA CCGCACGCAA CACCCGAGCA GGAATACATG TTTGAGCGTC CAGTGACCTT CGCGCATGGG GACGGTTCCA ACAGCGCCGG TCGTATTGAC TGCTACAGGC GCGGTCACTT CGTGCTGGAA GCCAAGAAGC TACGGGCGGG AGCCCATACC AAGGGTTTCG ACGACGGCCT GCTTCGCGCC CGCAGTCAAG GCGAGGCTTA CGCGCGCGCT TTACCCGCAG CGGATGGTCG CCCGCCCTTT GTGCTGGTAG TTGATGTTGG CACCGTCATC GAGGTCTATG CCGAGTTCAG TCGAAGCGGC GGTACCTACA CACCGTTCCC GGATCCGCGC AGCCATCGCA TTGCACTGGC CGATTTGGCG CGGCCCGAGA TACTGGAGCG GCTGCGTCGC ATTTGGGTCG ACCCGGAAAG CCTCAACCCG GCACGCATCA GCGCCGAAGT CACCCGCAAG GTTGCACAAC GCCTGGCGTT GCTGGCCCGC TCACTTGAGC AGGCGGGCCA GTCGGCCCAA CACGTTGCGG CCTACCTCAC GCGTTGTCTG TTCAGCATGT TTGCCGAAGA CGTCGCGCTT CTGCCTCAAG GCGCTTTTTT GGGTCTGTTG CAAACCCACC GGAAAGACCC AGCGGCACTG CAGCAGATGT TGCGCATCTT GTGGGCTGAC ATGGATATTG GCGGCTTCTC GGCCGCGCTG GTCAAGCCGG TACTCAAGTT CAATGGCAAG CTTTTCAAGG GTGCGAACGT CGACGGCTAC AGTTTGCTCC TGACGACCGA ACAAATCGAC CTGCTGATTT TGGCGGCGCA GGCGAACTGG CGCGAAGTTG AGCCTGCCAT TTTCGGCACA CTGCTGGAGC GTGCGCTGGA CCCGGCTGAA CGCCATGCCT TGGGCGCCCA CTACACCCCG CGGGCCTATG TGGAGCGCTT GGTATTGCCT ACGGTGATGG AGCCATTGCG CGCAGAGTGG GCCAATGCCC AGGCGGCGGC GCTGCTGCTG GCCCACGAAG CCGCAACGCT GGAAGCGAAT CCGCCTGCAG TCAAAACCAA AAAAGACTTC TTAGCCCTGG ACCGCCACAG CGCATCCGTG CGCGGCAAGT GGCGCGATGC CCGCCAACAG GTCAAGGACT TTCATCACCG CCTGTGCACA CTGCGCGTTC TGGACCCTGC CTGCGGTAGT GCCAACTTTT TGTATGTCAC GCTGGAACAC CTCAAGCGCT TGGAAGGTGA GGTTCTTAAC CAGCTCAGTG CCTTGGGCGA TACGCAGGAC TCTTTAGACC TGGGCCGTGA GACTGTGAAC CTGCAACAGT TGCGTGGTAT TGAACTGAAC GAGCGTGCTG CTGCCCTCGC AGAATTGGTT CTTTGGATTG GATACCTGCA ATGGCATATT CGGTCCTTCG GCAATGCCGG CGTTGCCGAG CCCGTGGTGC ATGACTACGG CAACATCGAG CATCGGGACG CCGTGCTGGA CTACGACCGC GTGGAGCCGA TGACGGACGA GGCCGGTAGC CCGATAATGC GCTGGGATGG CGTGACCACC AAGACCCACC CGGTGACGGG GCAGCAGGTG CCGGACGATG CTGCACAGGT GGTTCAATGG CGCTATATCA ACCCACGGCA GGCGCAATGG CCGGTCGTTG ACTTCATTGT GGGCAATCCA CCATTCATTG GCGCGGGAGC CATGCGCGGC GCATTGGGTG AGGGTTACGT GGATGCCTTG CGTGGCGCAT GGCCCAAAGT ACCAGAGAGC GCGGACTTCG TCATGTACTG GTGGCATCGC GCCGCCGAAA TGGTGAGTGC TGGGCAGGTG CAGCGTTTTG GTTTCATCAC TACCAATAGT TTGCGCCAAA CCTTCAACCG ACGCGTGGTG CAGACGGCGT TAACTGATGG CCTGTCTCTG CTGTTTGCCG TGCCTGACCA TCCGTGGGTG GACAGTGCCA ATGGCGCAGC GGTGCGCATT GCCATGACCG TGGCGGGTGC CGGTCAGAGC GACGGAAAGT TGCTGACGGT TCAAAGCGAG CAAGTGAGCG AGCACGGCGA AGTGCAGGTG GACATGGCGC AGACCGTGGG CTTAATACAT CCCGACCTTC GAATTGGTGC AAATGTTGCT GCATCCGTTG GCATGCGCTC AAACATGGAC TTGAGTAACA GAGGTGTGCA GCTTTTTGGA GCAGGGTTCA TTGTCAGCCC AGAAGAAGCA GCAGCCCTCG GCTTGGGGAG CGTGGCGGGC CTTGAGAAAC ATGTTCGCCA GTACCGCAAC GGGCGCGACC TGACCAGCAC ACCGCGTGGC GCGATGGTTA TCGACATGTT TGGGCTGGGT GTTAATGACG TTCGGGCGAA GTACCCCGCT GCCTATCAGT GGCTGTTGGA GCGCGTCAAA CCGGAACGTG ACCAGAACAA CCGTGCGACT TACCGCAACA ATTGGTGGTT CTTTGGAGAG CCACGACGAG TGTTGCGTCA TCAGCTCAAT GGTTTGTCGC GCTACATCGC GACCGTGGAG ACGGCCAAAC ACCGGGTATT CCAATTCTTG GATATCAGCG TTCTGCCTGA TAACAAGCTG GTTGCCATCG CTTTGAGCGA TGCCCTTCAA CTTGGGGTGC TCTCCAGCGC CGCGCACGTT GCATGGGCGG TGGCGGCAGG CAGCACGTTA GAAGACCGTC CGGTCTACGT GAAAACCACC TGCTTTGAAA GGTTCCCATT CCCCGGCGAG GACACAGGGC TAACCCCTCA GTTGACAGAG CGCATTCGTA GTCTGGCAGA GCAATTGGAT GCCCACCGCA AATCCCGTCA AGCCGCCCAC AGCACCGTGA CCATCACGGG CCTGTACAAC GTGCTGGATA AGCTGCGCAG TGGCGAGACT TTGACCGCCG CCGAGAGAAA TTTAAACGAC AACGGCTTGG TAGGCGTGCT GCGCAGCCTG CACGACGAGC TGGACGCTGC GGTGCTGTCT GCTTACGGCT GGGGTGACCT GTCATTGCCA GCCGATACGG ATGCACTGCT GCTGCGCCTG GTGGAGCTGA ACACCAGGCG AGCCAATGAA GAAGCTGCGG GCCTTGTGCG TTGGTTGCGG GCAGACTTCC AGAGCGGCAC GGGGCAAGGT GAGCAAACCT CCATTGAAGG TGCGACCGAA GCCGACGAGG ACGGTGACGC GGTCAAGCCA GTGGCAGCCA AAGTTGCTGT TGCGCAGAAG CCGTGGCCTA GCGGGTTGGC AGACCAAATC AAGGCCGTGG CCGACATACT GGCAGATTCC GGTACGAGTC TCGACCTTGA CGGCCTTGCA TCGCGCTTCA GCAACAAGGG GCGTTGCCGT GAACGCATTC CAATCATCTT GGATGCCCTG GTCGCCATTG GGCGAGCGCG CGTGCAGTCT GATGGCCGAT GGATAGATTC AGGTTTCAAC TGA
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Protein sequence | MDKKNTTAAF IKSWQGVAAS ELATAQSFVM DFCELLGVAK PHATPEQEYM FERPVTFAHG DGSNSAGRID CYRRGHFVLE AKKLRAGAHT KGFDDGLLRA RSQGEAYARA LPAADGRPPF VLVVDVGTVI EVYAEFSRSG GTYTPFPDPR SHRIALADLA RPEILERLRR IWVDPESLNP ARISAEVTRK VAQRLALLAR SLEQAGQSAQ HVAAYLTRCL FSMFAEDVAL LPQGAFLGLL QTHRKDPAAL QQMLRILWAD MDIGGFSAAL VKPVLKFNGK LFKGANVDGY SLLLTTEQID LLILAAQANW REVEPAIFGT LLERALDPAE RHALGAHYTP RAYVERLVLP TVMEPLRAEW ANAQAAALLL AHEAATLEAN PPAVKTKKDF LALDRHSASV RGKWRDARQQ VKDFHHRLCT LRVLDPACGS ANFLYVTLEH LKRLEGEVLN QLSALGDTQD SLDLGRETVN LQQLRGIELN ERAAALAELV LWIGYLQWHI RSFGNAGVAE PVVHDYGNIE HRDAVLDYDR VEPMTDEAGS PIMRWDGVTT KTHPVTGQQV PDDAAQVVQW RYINPRQAQW PVVDFIVGNP PFIGAGAMRG ALGEGYVDAL RGAWPKVPES ADFVMYWWHR AAEMVSAGQV QRFGFITTNS LRQTFNRRVV QTALTDGLSL LFAVPDHPWV DSANGAAVRI AMTVAGAGQS DGKLLTVQSE QVSEHGEVQV DMAQTVGLIH PDLRIGANVA ASVGMRSNMD LSNRGVQLFG AGFIVSPEEA AALGLGSVAG LEKHVRQYRN GRDLTSTPRG AMVIDMFGLG VNDVRAKYPA AYQWLLERVK PERDQNNRAT YRNNWWFFGE PRRVLRHQLN GLSRYIATVE TAKHRVFQFL DISVLPDNKL VAIALSDALQ LGVLSSAAHV AWAVAAGSTL EDRPVYVKTT CFERFPFPGE DTGLTPQLTE RIRSLAEQLD AHRKSRQAAH STVTITGLYN VLDKLRSGET LTAAERNLND NGLVGVLRSL HDELDAAVLS AYGWGDLSLP ADTDALLLRL VELNTRRANE EAAGLVRWLR ADFQSGTGQG EQTSIEGATE ADEDGDAVKP VAAKVAVAQK PWPSGLADQI KAVADILADS GTSLDLDGLA SRFSNKGRCR ERIPIILDAL VAIGRARVQS DGRWIDSGFN
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