| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3963 |
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| Symbol | |
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| ID | 3936444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 4060886 |
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| End bp | 4062259 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637906341 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_511905 |
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| Protein GI | 89056454 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0920263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.56178 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGGCCC ATATCGATCA GGACCTGACG AAAGGTCCCA TCCCGAAGCA TTTCTGGGCG
CTGGCCATCC CTGCCGCCGT GGGGATGCTG TTCAACACGC TCTATAACGT CGTGGATGTC
TACTTCGCGG GGCTCGTGTC CACCGCGGCG CAGGCGGGTC TGTCGTTGGG ATTTCAGATC
CTGTTCGTCA GCATGGCACT GGGTGTGGGC CTTGGGGCGG CCATGGGCGC GCTGGTGGGC
AACGCGCTGG GGGAAGGCGA TAAACGGCTG GCGCGGCGAT ACTGCGCCCA GGGCATCAGC
TATGGCCTGT TGGGGGCGGT GATCCTTGCG GTCGCCGGTC AGGCCTACGG GCCGGGCCTG
ATCAGGTTCG TGTCGGCCGA GGCGGAATAT CAGAACACGG CTATCACCTA TTACCGCCTG
CTGACGCTGG CGCTGCCGGG CTTCATCCTG GCCGCAGGAT GCAACGGCAT CTTGCAGGCC
CACGGCGACG GCAAATCCAT GCGGCGCGCG CTGATGGTCG CTTTCTTCGT CAATATTGGC
CTGAACCCGC TGCTGATGTT TGGCATTCCG GGCGTCTGGG GCGGCCTGGG CTTTCCGGGG
CTCGCCGTGT CGACCATCAT CAGCCAGACC GGCGTGATGG CCTATCTGAT CCGGCAGGTG
ATCCGCCTCG ACACGATGGA GGCGACGGAG CCGCGCCATT TCGCCCCCGA CTGGCCGCGC
TACAAGGAGA TCACCGAACA GGTCGTGCCG TCGGGCTTCG CCTTCCTGAT CATGATCCTT
GCGGGCGTCG TGGTGCAATT CGCGCTGAAA GATTTCGGAG AGCACGCGGT GGCGGGCTTC
GGCATCGGCA TCCGGCTGGA ACAACTGGTG ATCCTGCCGC TCATCGGCAT GTCGAGCGCG
CTTCTGCCCA TCGCCGCGCA AAACCTCGGC GCGGGCAACC CCGACCGGGT GCGGGAGGCG
ATCTTCTATT GCTGGAAGGC GGGCGCAGTG ATCGCGCTGA TCGCGGGCCC GATCCTGTTT
TTGGGCGCCC CTTATTTCGT GCGCCTGTTC ACCAACGACG CGGACGTCAT TCTTGTGGGC
CGCGACTACC TGCGGGTGGG GGCGTTCATG CTCTATGTCT ACCTCATCCA CTTCTCGATC
ACGTCGTTCC TGCAAGCGGC CAAACGCCCG ATCTGGTCGC TCTGGATCAG CCTTTACCGG
CAGGCCTTTG GCGTCGCGTT CTTCGTCTGG CTTTATGTCG GGGTCTTCGG GATGCCGGTG
ATCGGTGTCT GGTTCGGCAC CTCCACCGCG GCGGCGACGG GTGCAGTCAT GGCGCTGCTG
GTGGCGCGCC ACATCGCGCG GGAAAAGATC GGCGGATTGA GGGGAGAGGC GTGA
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| Protein sequence | MAAHIDQDLT KGPIPKHFWA LAIPAAVGML FNTLYNVVDV YFAGLVSTAA QAGLSLGFQI
LFVSMALGVG LGAAMGALVG NALGEGDKRL ARRYCAQGIS YGLLGAVILA VAGQAYGPGL
IRFVSAEAEY QNTAITYYRL LTLALPGFIL AAGCNGILQA HGDGKSMRRA LMVAFFVNIG
LNPLLMFGIP GVWGGLGFPG LAVSTIISQT GVMAYLIRQV IRLDTMEATE PRHFAPDWPR
YKEITEQVVP SGFAFLIMIL AGVVVQFALK DFGEHAVAGF GIGIRLEQLV ILPLIGMSSA
LLPIAAQNLG AGNPDRVREA IFYCWKAGAV IALIAGPILF LGAPYFVRLF TNDADVILVG
RDYLRVGAFM LYVYLIHFSI TSFLQAAKRP IWSLWISLYR QAFGVAFFVW LYVGVFGMPV
IGVWFGTSTA AATGAVMALL VARHIAREKI GGLRGEA
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