| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3959 |
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| Symbol | |
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| ID | 3936440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 4057674 |
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| End bp | 4058504 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637906337 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_511901 |
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| Protein GI | 89056450 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.406686 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTAT CCCGCAGAGT ATTCGCGGCC AGCCTCGGAG TTGCCGCCGC AATGGCAGCC
CTGCCCGCCA CAGCCCAAAG CGCGGCGCAA TCGTTGGCCA GCGAAAGCGT CCTGACCACC
ATCCAGGAAG AAGGCGTGAT CCGCATCGGC CTGTCCATTT TCACGCCATG GTCCATGCGT
GACGTCAACG GAGAGCTGAT CGGCTTCGAG TTGGACGTGG GCCGCGCGCT GGCCGAGGAC
ATGGGTGTCG AGGTGGAATT CGTGCCCACC GCCTGGGACG GCATCATCCC CGCGCTTCTG
GCGGGCAATT TCGATGTCAT CATCTCGGGC ATGTCGATCA CGCCCCAGCG CAACCTGACG
GTCAACTTCA CCGATCCCTA CGCCTATTCC GGCATGGCGA TCCTGGCCAA TACCGCCATG
ACCGAAGGCA TGACGATGGA CGATTACAAC TCGCCCGACA TCACCTTCGC CGCCCGCCGT
GGGGCCACGC CCGCAACCGT CATCCAGAAC CGCTTCCCCG AGGCTGAGTT GCTGCTGTTC
GACGAGGATG GCGCCTCGAC CCAGGAGGTT CTGAACGGCA ATGCTCACGC CACCATGGCG
TCCCAGCCCA CGCCGGACCG GGAAGTGCGC CTGAACCCGG AAACGCTGTC AGTGCCCTTT
GATGAGTTGA TCGACCCCAC GGGCGAAGCC TTCGCTGTGC GCAAGGGCGA CCCGGACGCG
ATGAACTTCT TCAACAACTG GATCGCGGCG CGCACGCGCT CTGGCTGGCT GGAAGAGCGT
CACGATTACT GGTTCGTCGG GGACGAATGG GCCGATCAGG TTCCGGAATA A
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| Protein sequence | MTLSRRVFAA SLGVAAAMAA LPATAQSAAQ SLASESVLTT IQEEGVIRIG LSIFTPWSMR
DVNGELIGFE LDVGRALAED MGVEVEFVPT AWDGIIPALL AGNFDVIISG MSITPQRNLT
VNFTDPYAYS GMAILANTAM TEGMTMDDYN SPDITFAARR GATPATVIQN RFPEAELLLF
DEDGASTQEV LNGNAHATMA SQPTPDREVR LNPETLSVPF DELIDPTGEA FAVRKGDPDA
MNFFNNWIAA RTRSGWLEER HDYWFVGDEW ADQVPE
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