| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3517 |
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| Symbol | |
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| ID | 3935991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3573854 |
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| End bp | 3575014 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637905891 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_511459 |
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| Protein GI | 89056008 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00227443 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGGGG TAGACCGTTG TAATCATGGT GCCTGCGACC CTCCGCGTGG CCCGCAATGG
TGCCCGCGTG GATTTTCTCA TTTAACAAGC GCGCCAAGTC CCGCAATACT GGTCCAATAC
ATGGACCGCA TGCCACTTTG GGAGGATATC ATGCAAAAAC TTCTAACACG CACCGCGCTT
GCAACCCTGG CCCTGACAAT CGGGACGGAG GCGATGGCCA CCGAATGGAA CGTGTCCCTT
TGGGGTCAGC GCCGCGCCTT CACTGAACAT GTTGAGCGTC TGGCCGAGTT GGTGTCGGAG
CGCACCGACG GAGAGTTCAC GCTGAACATC AGCTACGGCG GCCTGTCGTC AAACCGTGAA
AATCTTGATG GCATTTCCAT TGGCGCATTC GAGATGGCGC AATTCTGCGC GGGCTACCAT
GCGGACAAGA ACCCCTCCAT CACCGTGCTG GAGCTGCCGT TTCTGGGCGT GACCTCACTG
GAGCAGGAAG TTGAGCTGTC CATGGCGCTC TACCAGCATC CCGCCGCGAT CGAAGATCTG
GCGCGCTGGA ATGCAACGCT GCTGATGCCC TCGCCGCTGC CGCAGTATAA CCTTGTCGGC
GTGGGCGACG CGCCCTCATC GCTTGCGGAT TTTGAAGGTC TGACCGTACG CGCCACCGGT
GGCATCGGTG CGGCCATGTC CACCGTTGGT GCCGTCCCGA CCTCGATGTC CGCCACTGAA
GTGCGCCAGG CGATGGACTC GGGCGTTGTG CGGGCTGTCA GCTTTGCGCC CCACGCGCAT
ATGTCCTTTG GCACGATTGA GAATGCCACC TGGTGGACCA CGAACCTCAA CCCCGGCACC
GTGAATTGCC CCGTCGTCGT GAACTCCGAC GCATTGGCCA GCCTGTCCGA TGAAGAGCGG
GACGTCCTTC TGGGCGCCGT TGACGAGGCA CTGGATCACT ACGTCGCCAA CTACAACGGG
GCTACGATGG ATGCCTGGGG CCCGGCCCTT GAAGAGCGCA ACATTGAGCA GGTCACGTTC
TCGGAGGAAG AACTGGCTGC GTTCCGCGAA GCCGCAGCCG ACCCGGCAGC CGCGGCCTGG
ATCGAGGACA ACGCCGCCCG CGGTTTGCCC GCCCAGGAGC TTTACGACTT TGTCACCGGC
ATGATCGCCG AGGCAAACTA A
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| Protein sequence | MAGVDRCNHG ACDPPRGPQW CPRGFSHLTS APSPAILVQY MDRMPLWEDI MQKLLTRTAL
ATLALTIGTE AMATEWNVSL WGQRRAFTEH VERLAELVSE RTDGEFTLNI SYGGLSSNRE
NLDGISIGAF EMAQFCAGYH ADKNPSITVL ELPFLGVTSL EQEVELSMAL YQHPAAIEDL
ARWNATLLMP SPLPQYNLVG VGDAPSSLAD FEGLTVRATG GIGAAMSTVG AVPTSMSATE
VRQAMDSGVV RAVSFAPHAH MSFGTIENAT WWTTNLNPGT VNCPVVVNSD ALASLSDEER
DVLLGAVDEA LDHYVANYNG ATMDAWGPAL EERNIEQVTF SEEELAAFRE AAADPAAAAW
IEDNAARGLP AQELYDFVTG MIAEAN
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