| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3450 |
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| Symbol | |
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| ID | 3935924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3497884 |
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| End bp | 3499890 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637905824 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_511392 |
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| Protein GI | 89055941 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.472971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAG ATACCGACGA TCGTAAGCAG GACGGCGACG AGACCGAAAT GGGCCTGGAT
ATGAGCCAGG CCGCCGTCAA GAAAATGATC GCGGAGGCTC GGGTCAGAGG CTACATCACC
TACGATCAGC TCAACACCGT TCTGCCGCCG GAGCAGGTCA GCTCGGAGCA GATCGAAGAC
GTCATGTCGA TGCTGTCGGA GATGGGCATC AACATCATCG AGGATGATGA GGCCGAGGAA
GGCGACGACA AACCCGCCGG CGAATTGGTG ACCACCGAAG GCTCCCGCGA GGTCGCGGTT
GCAGCCACGG AGACCGAGAA ACTCGACCGC ACCGATGACC CCGTCCGCAT GTATCTGCGC
GAAATGGGCA GTGTGGAACT GCTGTCGCGT GAGGGCGAGA TTGCCATCGC CAAGCGGATC
GAGGCCGGGC GCAACACGAT GATCGCGGGC CTGTGCGAAA GCCCGCTGAC CTTCCAGGCG
ATCACCATCT GGCGTGACGA ACTTCTGGAA GAAGACATCC TGCTGCGTGA TGTCATCGAC
CTCGACACCA CCTTCGGGCG CACGATGGGC GATGAAAACG ACACCCCGGT CGTGCCCGCA
GGCGTCGGCT CCACGCCGCC ATCCGCCACG CCCGCCCCCC CGCCGGAGCC AAAGAAAGAA
GAGCCTACGC AGGAACTGGA CGCCGACGGC AACCCCATCG CCAAGGACGA CGATGAGGAT
GAGGACGAGC AGGCCAACAT GTCGCTCGCC GCGATGGAAC TGGCGCTGAA GCCCCAGGTC
CTCGCCACGC TTGACCAGAT CGCCAACGAT TACATCCGCC TGTCGGAAAT GCAGGACAGC
CGGATTTCGG CGACCCTGAA CGAAGATGAC AGCTTCTCCA AGGCAGAGGA GGCCGAATAC
CAGCACCTGC GCTCCGAGAT CGTGGAACTG GTCAATGAGC TGCACCTGCA TAACAACCGC
ATCGAGGCGC TGGTGGACCA GCTTTACGGC ATCAACCGCC GGATCATGTC CATCGATTCC
AGCATGGTGA AGCTGGCCGA TCAGGCCCGC ATCAACCGCC GCGAGTTCAT CGAAGAATAC
CGCAACCAGG AACTTGATCC GACCTGGATG GAGCGGATGA CGCAAAAGTC CGGCCGCGGC
TGGCAGGCGC TGATGGAGCG CTCGTCGGGC AAGATCGAGG AATTGCGCGG GGATATGGCG
CAGGTCGGTC AGTATGTGGG CCTCGACATC CCCGAATTCC GCCGCATCGT GAACCAGGTC
CAGAAGGGCG AGAAAGAAGC CCGCCAGGCC AAGAAGGAAA TGGTCGAAGC CAACCTGCGT
CTGGTGATTT CCATCGCCAA GAAATACACC AACCGGGGCC TGCAATTCCT TGATCTCATT
CAGGAAGGTA ACATCGGCCT GATGAAGGCC GTCGACAAGT TCGAATACCG CCGGGGCTAC
AAGTTCTCCA CCTATGCGAC GTGGTGGATC CGTCAGGCGA TCACCCGCTC CATCGCCGAT
CAGGCCCGCA CGATCCGCAT CCCGGTCCAC ATGATCGAGA CGATCAACAA GCTGGTCCGC
ACCGGTCGCC AGATGCTGCA CGAAATCGGC CGGGAGCCGA CGCCGGAGGA ATTGGCCGAG
AAGCTGCAAA TGCCGCTGGA GAAGGTCCGC AAGGTGATGA AGATCGCCAA GGAGCCGATC
AGCCTTGAGA CGCCCATCGG CGACGAGGAG GATTCACAGC TTGGCGATTT CATCGAGGAC
AAGAACGCCG TCCTGCCGCT GGATTCAGCG ATCCAGGAGA ACCTCAAAGA AACCACAACC
CGGGTTCTGG CCTCCCTCAC CCCCCGCGAA GAACGCGTCC TGCGCATGCG CTTCGGCATC
GGCATGAACA CCGACCACAC GCTGGAAGAA GTCGGCCAAC AGTTCAGCGT GACCCGCGAA
CGGATCAGGC AGATCGAGGC GAAGGCGCTG CGGAAGCTGA AGCACCCCAG CCGGTCAAGG
AAGCTGCGGT CGTTCCTGGA TCAGTGA
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| Protein sequence | MAKDTDDRKQ DGDETEMGLD MSQAAVKKMI AEARVRGYIT YDQLNTVLPP EQVSSEQIED
VMSMLSEMGI NIIEDDEAEE GDDKPAGELV TTEGSREVAV AATETEKLDR TDDPVRMYLR
EMGSVELLSR EGEIAIAKRI EAGRNTMIAG LCESPLTFQA ITIWRDELLE EDILLRDVID
LDTTFGRTMG DENDTPVVPA GVGSTPPSAT PAPPPEPKKE EPTQELDADG NPIAKDDDED
EDEQANMSLA AMELALKPQV LATLDQIAND YIRLSEMQDS RISATLNEDD SFSKAEEAEY
QHLRSEIVEL VNELHLHNNR IEALVDQLYG INRRIMSIDS SMVKLADQAR INRREFIEEY
RNQELDPTWM ERMTQKSGRG WQALMERSSG KIEELRGDMA QVGQYVGLDI PEFRRIVNQV
QKGEKEARQA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY
KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLVR TGRQMLHEIG REPTPEELAE
KLQMPLEKVR KVMKIAKEPI SLETPIGDEE DSQLGDFIED KNAVLPLDSA IQENLKETTT
RVLASLTPRE ERVLRMRFGI GMNTDHTLEE VGQQFSVTRE RIRQIEAKAL RKLKHPSRSR
KLRSFLDQ
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