Gene Jann_3313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3313 
Symbol 
ID3935786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3367972 
End bp3368271 
Gene Length300 bp 
Protein Length99 aa 
Translation table11 
GC content63% 
IMG OID637905686 
Productsterol-binding 
Protein accessionYP_511255 
Protein GI89055804 
COG category[I] Lipid transport and metabolism 
COG ID[COG3255] Putative sterol carrier protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00254715 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0577925 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAATC CAGTCATCGA CGCCGCAGTG GCCGCGTTGA GCGAAAAGAT GTCCGGGGCC 
GATTTTGACG GCACCGCGAA ATTTGTGATC GAAGGCGAAG GGGCCGTGAT CGTGGACGGC
ACAGGCGTGC GCGCCGCCGA TGACAGCGAC CATGCCGACG TGACCATGTC CGCCGACGCC
GATGTCTTTC AGGAGATCAT GGCAGGCGAT CTGAACCCTA CGGCGGCCTT CATGGGCGGC
AAGCTGACGC TGGATGGCGA CATGGGCACG GCGATGAAGC TCGGGTCTGC CCTGAGCTGA
 
Protein sequence
MSNPVIDAAV AALSEKMSGA DFDGTAKFVI EGEGAVIVDG TGVRAADDSD HADVTMSADA 
DVFQEIMAGD LNPTAAFMGG KLTLDGDMGT AMKLGSALS