| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3097 |
|---|
| Symbol | |
|---|
| ID | 3935568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3134357 |
|---|
| End bp | 3135169 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637905468 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_511039 |
|---|
| Protein GI | 89055588 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.413253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA GCCGACAAAT TCTGTCGCCA GACAGCCAAC TTGAAATCGG CCCCGCTGAA
ACCGCGGATC GGCCCATCGT CGGATATGCC AAGGATTACC CAACTGATCA TCTGGCCCTG
CCGCATACCC ACCCAAAGGC GCAGCTCATT TATGCCGTCA GTGGCGTGAT GCATGTCGAT
ACCGGCACAA GCAGCTACAC CCTGCCACCC ACCACGGCAC TTTTGATGCC CGCAAACAGG
GCGCACAGCA TCTACATGGA CGGGCCGGTC GCCATGCGCG CCCTGTTTCT TCAGCAAAAA
CAGCCATCTG TCGATCTGTC CGCGTGCAAG GTGGTGTCCG TGTCGGCGCT GTTGAAAGAG
CTTATTCTGG CGGCCTGTGA TGAGCCGGTG GAGTGGGAGC AAACGGGACG CGCCCCCCAT
ATCGTGGCCC TTGCCCTTCA TGAAATCGCA CAGGCCGTCA ATCTGCCGCT GGGGCTTCCC
TTGCCCACAG ATCCCCGGAT TGCGCGCGTC ACAGATGCAT TGCGCATGCG CCCTGCCGAT
AGTCGGTCTT TGCAAGACTG GGCCCTGTTC GCAGGCGCAT CCGAGCGCAC GCTTGCCCGG
TTGTTTCGCA AGGAAACGGG TATGACATTC AATCAATGGC GGGGTCAGGC CCGTTTGACC
GCCGCGTTGA GCGCCTTGTC GCAGGGCCGC ACCCTGGCCC ATGCCGCCGC CGTTGCAGGT
TACGACAGCC AACCGGCTTT TGGTGCAGCC TTTCGGAGGG CGTTTGGCCA GACACCCGGC
GAGGCGCGCG CGCAACATGC GACGAGGATC TGA
|
|---|
| Protein sequence | MTTSRQILSP DSQLEIGPAE TADRPIVGYA KDYPTDHLAL PHTHPKAQLI YAVSGVMHVD
TGTSSYTLPP TTALLMPANR AHSIYMDGPV AMRALFLQQK QPSVDLSACK VVSVSALLKE
LILAACDEPV EWEQTGRAPH IVALALHEIA QAVNLPLGLP LPTDPRIARV TDALRMRPAD
SRSLQDWALF AGASERTLAR LFRKETGMTF NQWRGQARLT AALSALSQGR TLAHAAAVAG
YDSQPAFGAA FRRAFGQTPG EARAQHATRI
|
|---|
| |