| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3020 |
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| Symbol | |
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| ID | 3935491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3038411 |
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| End bp | 3040627 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637905391 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_510962 |
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| Protein GI | 89055511 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.988422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCAG AAGCTGATTT CATCCAGGCG GATCGCATTT TGCGGGTGGA AACCCCTTTG
GGCGATGATG TCCTGCTGGC TGAAAAACTT GATTTGCGTG AAGTGATCTC GGGGTTTTTT
GAAGGGACCT TGGTGGCGCG GTCCAAGTCG CGCGATCTTG CCCCCGGTGA TCTGCTTGGC
AGTCTGGTGG ATGTCTCCGT TGAACTGGGT GGCGGAGAAC GGCGGTCCTG GAATGCGCTG
GTGATGGGGA TGACCGCCGG GCCAAAGGCG ACGCGCGGTC TTCAGAGCTA CACTCTGATG
TTGCGCCCGG AAGCCTGGCT TCTGACTCAA ACCTCCGATT GCCGGATCTG GCTGGACAAA
TCCTCCGTCG ACGTGGCCGA GGCGCTGCTT GGCGAACACG GCATTACCGC GCCGGTGATA
GGTGGCATTA CCAGCCCGCC GCCGCCCAAG CATTACTCCG TTCAGTATAA CGAGACGGAC
TGGGCGTATC TGGTGCGCCG TCTGGAAGAG GATGGCATCT TTTATTGGTT CGAGCATGAA
GAGGGCGCGC ATAGAATGCA TATCGCCGAT CATGCTTCGG GCTACACCAG CGGGAATGAC
CCGGACGTGC GCTTCGCCGC AGGGTCCACC GACCGGAACC ACATCACCCG GTTCGAGACG
CGGCTGGCCT ACACCCCCGG CGTCCACGCT GGCGGTGATT GGAACTTCGA GACCCCCGGC
CAGGTCCCCG GTGGCGATGC ACCGAGCCTT GTGTCACTGC CGCGCAACGG CAACTACGAG
ATGTATGAAT ATCCTGCCGT GTCAGGCTAT GGCACCGGCA CCCGCGCGTC TGAGGGGATC
GCGGACGCCG AGGTCGCGCG GCTGTCACGG TTGCGGATGC AGGCGATGGA GATGACCCAT
AAACAGATCG ATGGGGGTAG CAACGTCCGG ACCCTCGCAG CGGGTCGCAA GTTTACTCCC
TACGACGTGG CGAACCAGGA CAATGTCATG GGCGAGTATG TCACCCACAT GATCGAACAC
GCCGTCGTGG ATACCAGCTA CGAGAGCGTG GAAAACCAGC CCGAATACCT CAACCGCTTC
GTGGCGCTGC CCTCGGACCT GCCCGCCACG CCGGGGCGCA CCGTGCCGCG CCCGCGCATT
GATGGCGCGC AGGTGGCCAT CGTCGCGGGC CCGGAGGGGG AGGAGATACA CCCCGACGAA
TACGGTCGTA TCAAGGTCTG GTTCCCCTGG GATCGGCGTG CGTCCAAGGA CGGATCCGAT
ACCTGTTGGC TACGGGTCAT GCAGAATTGG GCCGGGGGCG GTTGGGGCGG CCAGGTCATT
CCGCGTATCG GGATGGAAGT GATGGTCAGC TATCTGGAAG GGGATCCTGA CAGGCCCGTT
GTGACCGGGA TCGTACCCAA CCCAAGGCAG CGCGTTCCCT ACGACCTGCC AATCAACAAG
ACCCGCAGTA CATTCCGCAC GAATACCCAC AAAGGTGCCG GATTTAATGA ATTGCGGTTC
GAGGATGAGC GCGGAATTGA AGAGATCTTC ATGCATGCGC AGCGTGACAG AAACACGATC
GTTAACTTTG ATGATTCCTC GATCGTGCGT GGAAATGCGC TGTCCAAGAC GTTCGGGGAA
AAAGTGACGG CCACCAATGG CTCGTCCCGT GAGCAGATCG GAGGCTCCTC GGAAATGCAC
GTGATGGGCA ATATGAGCCT TAACGTTGGA CCGAAAGGAC ATAACCGGCG ATTGGTAGAG
GCGGGTCGTT TCGGTGATCA CGGGTATCGC GATGGATCGC GCAGAGATTT CAATACTTTC
AAGCGGGAGA TGCGGCCGGG TCTTGGGTCG GGCAACAACG GCTCGTTCCA GATCAACACC
CAAGGCGCGT TCAACGTTGA TGCGGACCGC GACATGGATC TTTATACCGC ACAAAGGTTC
GACCTGAATG CCAAGGAAGG GTGCGAACTG AGCACCGAGG CGAACATTCA CCTCGCATCT
GAGCGGTCAA CGTCTATTTC GAGCGGGGAT TCCGTGACCA TCAGGGCGAC GCGTGAGCTT
GTGCTGATGT GCGGTCAGGC TCGCATCGTC CTGCATTCCG ACGGTAGGAT TGCCCTTGAC
GGGTCATTCA TAAGTACGGT TGCCAGCGGC ACTGTCCGAA CCAATGCAAA TGGCAATATT
GAAGAGAACG CCCGCGCGCG TTTCATTATC ACCGGCAACG ATGTGGATAT CAATTGA
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| Protein sequence | MNAEADFIQA DRILRVETPL GDDVLLAEKL DLREVISGFF EGTLVARSKS RDLAPGDLLG
SLVDVSVELG GGERRSWNAL VMGMTAGPKA TRGLQSYTLM LRPEAWLLTQ TSDCRIWLDK
SSVDVAEALL GEHGITAPVI GGITSPPPPK HYSVQYNETD WAYLVRRLEE DGIFYWFEHE
EGAHRMHIAD HASGYTSGND PDVRFAAGST DRNHITRFET RLAYTPGVHA GGDWNFETPG
QVPGGDAPSL VSLPRNGNYE MYEYPAVSGY GTGTRASEGI ADAEVARLSR LRMQAMEMTH
KQIDGGSNVR TLAAGRKFTP YDVANQDNVM GEYVTHMIEH AVVDTSYESV ENQPEYLNRF
VALPSDLPAT PGRTVPRPRI DGAQVAIVAG PEGEEIHPDE YGRIKVWFPW DRRASKDGSD
TCWLRVMQNW AGGGWGGQVI PRIGMEVMVS YLEGDPDRPV VTGIVPNPRQ RVPYDLPINK
TRSTFRTNTH KGAGFNELRF EDERGIEEIF MHAQRDRNTI VNFDDSSIVR GNALSKTFGE
KVTATNGSSR EQIGGSSEMH VMGNMSLNVG PKGHNRRLVE AGRFGDHGYR DGSRRDFNTF
KREMRPGLGS GNNGSFQINT QGAFNVDADR DMDLYTAQRF DLNAKEGCEL STEANIHLAS
ERSTSISSGD SVTIRATREL VLMCGQARIV LHSDGRIALD GSFISTVASG TVRTNANGNI
EENARARFII TGNDVDIN
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