Gene Jann_2424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2424 
Symbol 
ID3934881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand+ 
Start bp2419889 
End bp2420476 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content53% 
IMG OID637904782 
ProductTetR family transcriptional regulator 
Protein accessionYP_510366 
Protein GI89054915 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.351018 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.169274 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGGTT TGGAACGTGG AGAGCTTAGG CAGGCGTTAC TTGCGGAAGT GAAGAAAGTT 
TGTGCCGGTC AAGGGCCTGA GGCTGTTTCA ATCTCGAAAA TAGGCAAATC CCTTGGGGTC 
AGTTCGGGTG CACCGTTCCG ACTGTTCCCA TCGCGAGAGC ATATATTCGC AGCCTTGATT 
GAGTCAGAGA TGGAGCGGCT TGACGCCACG TTCGAACGTA TCTGGTCGTG CAAAACCACG 
GACCCGGTGC TCCGGCTGAC CGATATTTGC CAAGCCTATG TTGACCATGC CCGCACGGAG 
CCGGCGATGT TCCGTTTGGC TTTTTCCGTA TCGGCCAAAG CAATGGGTGC AGTGAAACTT 
CAGAAAATCG GAGAGGACGT TTACGAAAAA GTCCAACGCG CCGTGGCTGC GTGTGTCCCT 
CGGCACACCA CCACGGATCA GGTTGAGCTG AAAAGTTATC TTCTTTGGTC AACGATCCAC 
GGGCATGTGA TGCTCTGCAT GACGGGGCAG ATGGATGATC AAAGTATCGA CTTACCTGAC 
GAAATTGTAG TCGCATCCGC GGTGCAGGGA ATTTTGAAAG CAGGTTAA
 
Protein sequence
MAGLERGELR QALLAEVKKV CAGQGPEAVS ISKIGKSLGV SSGAPFRLFP SREHIFAALI 
ESEMERLDAT FERIWSCKTT DPVLRLTDIC QAYVDHARTE PAMFRLAFSV SAKAMGAVKL 
QKIGEDVYEK VQRAVAACVP RHTTTDQVEL KSYLLWSTIH GHVMLCMTGQ MDDQSIDLPD 
EIVVASAVQG ILKAG