| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2387 |
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| Symbol | |
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| ID | 3934843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 2389165 |
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| End bp | 2390199 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637904745 |
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| Product | spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein |
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| Protein accession | YP_510329 |
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| Protein GI | 89054878 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.246061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAAA CAACCCTTCT TGCCAGTGCC GCGACGCTTG CGCTGGCGGT GCCTGCCACA
GCCCAGAACC TGACCGTGTT CGATTACTCG GGCTTTGAGG ATCCGGCCTT TCACCAGCCG
TTCATCGACG CCCACGGTGC GCCGGAATTC GTGTTCTTCG GCGATGAGGA TGAGGCGTTC
CAGCGTCTTC TGGCGGGCTT CCAGTCCGAT GTGACGCATA TCTGCGCAGG CTCCGTGCCG
CGCTGGCAGG CCTCGGGCAT CATCGAGGCC TGGGAGACGG ACCAGATCGC GGCGTTCGAG
ACGCTGAACG CCGATCTGGT GGGCCAGGAC GTGCTGGCGG GCAGTGAGGA CCTGTTCTTC
CTGCCCACCG ATTACGGCTC CACCGCATTG GCCTACAACG CGGATGAGCT GTCCGAGAGC
GATGTGACGT CGCTGGAGAT CTTCAACAAC CCCGCTTTTG CGGGCCGCCT GTCGATCCCC
GATAACGTCG ATGACGCCTA TGCGCTGGCC TACCTGGCCA CGGGTGTCAC CGATTGGGCC
GATGCATCTG ACGCAGAGTT TGAGGCCGCG ACTGACTGGC TGCGCGGCAT TCACCAGAAC
CTGCGCACCT ATTGGACCGA TCCGGCTGAG ATCAGCCAGC TGATCGGCTC GGGCGAGGTT
CTGGCCGCCT GGGTCTGGAA CGAGGTGCCC GTGGCCATGG CCGAGGAAGG CTTCAACGTG
GGCTTTGCGC GCGATACGGC GGAAGGCACG TCCGTGTGGC TGTGCGGCTA CGTGAACATG
GTCGACGCGC CGGGCGAGGA GCCGATGGCC TACGACTACG TCAACGCCGT GTTGTCAGAG
GGATCTGCCG GACCGCTTCT GGGCAGCGGC TTTGGATCGG CCAATGATGC CGCCCTTCAG
GCCTTGGGCG CGGAGGCCAT GGAGGCTGCG GGTCTGGGTG ACGTGACGGT GCCGGTTCTG
GCGCAATTGC CGATTTCCAA CGAACAGCGA GAGCGGCAGG CAGAGGCGTT TGAACGCATT
AAGGCCGGGT TCTAA
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| Protein sequence | MTKTTLLASA ATLALAVPAT AQNLTVFDYS GFEDPAFHQP FIDAHGAPEF VFFGDEDEAF
QRLLAGFQSD VTHICAGSVP RWQASGIIEA WETDQIAAFE TLNADLVGQD VLAGSEDLFF
LPTDYGSTAL AYNADELSES DVTSLEIFNN PAFAGRLSIP DNVDDAYALA YLATGVTDWA
DASDAEFEAA TDWLRGIHQN LRTYWTDPAE ISQLIGSGEV LAAWVWNEVP VAMAEEGFNV
GFARDTAEGT SVWLCGYVNM VDAPGEEPMA YDYVNAVLSE GSAGPLLGSG FGSANDAALQ
ALGAEAMEAA GLGDVTVPVL AQLPISNEQR ERQAEAFERI KAGF
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