| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2258 |
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| Symbol | |
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| ID | 3934713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 2264230 |
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| End bp | 2266173 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637904615 |
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| Product | SARP family transcriptional regulator |
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| Protein accession | YP_510200 |
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| Protein GI | 89054749 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0203775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACAGG GTCCGTCGGG ATCATTTGCA GCCCGTTTCT TCGGAGCTTT TGCTGTCAAG
GATCCCTTGG GAAACCCCGT CACGCCGCGT GGCCAGAAGC CGGCAGCTCT CCTGGCGTAT
CTTCTGTATA ATGCAGGCCG GGACGTGCCC CGCGACCGAC TGATTGATAT GTTCTGGAAT
GATCGCGGGT CCAAGCAGGG GCGCGACAGT CTCAGGCAAG CGCTCCATGT GCTGCGCTCC
ACGATTGGCG AGGCGGGCGC GGTCCTGATG CATATTGATC GACAAAGCGT GCATGTGGTC
AAAGCGCATC TTTCAAGCGA CTTGCAGCAG AAGGAAGACG CGCCGTGGGA ATTGGACGGA
GAGTTCCTTG CTGATCTTGC CCCGACCGCA CCCGTCTTCG AGGACTGGTT GACAGAGACA
CGGCGCGCGG TGCGACGTCA TCAGGTTGCG GCGGCAGAGC AGGCCCTGGA CCGCCTGGAT
GCGGAGGCCA ATCCGGATGC CGTGCTGGCC TGTGCCACCG CGATATTGTC GCTTGATCCC
CATCATGAGC CCGCGGCGCG ATGCGCGATG GAACGGTATG CGGTTCAAGG CAAGAGAGGC
CACGCGCTCC GCGTTTTCGA GACTTTGTCT GAGGCACTCA AATCAGATGG ATTTGAGGTC
TCACCAGACA CGGACAACCT GCTTCGTGCG ATCAGCGACA ACCGGTTCCC AATCGACAAG
CCACACCCCG CGCCAACGCC CCGGCCAGGT GCGTCAGGTG ACGCCCGCGG TTTGCCCGTT
GTCTGGCTCG ACCTGTCCGA AACCCGCCAC GATCGCGATA GCTGGGACTT TGTCTCGGAT
TTCTGTGATC ACCTCATATT GCGGTGTGTC CAGATGCCGG AGTTCAACCT GCTGACGGTT
GAGGATGTCA CAGATATTGA GAAATACACT GTGGCCGTCT CATCCGGCAC CACCCAATCA
GGTCTGCGCA TCAGCCTGAG GCTCCGGGCG CCGGACGATC ACTTGCTGTG GTCGGGTCGC
GCGGATCTGC CTGATCAACC GGACGATGAC CGGGTTCACC TGGCCGTGGA CAAGTTGGTG
ATGCAGATGC TGCCCCCGCT GGAGGCCCAT GTGTTCGCAA GTCTGGGCGC GCAGATCGAC
ACCGCCTACG GATATTACCT CAAGGCCAAG CGGACGTTCT GGACCGATCC GCAATTCGGC
TACATCGACA AAGTGGTTGC CGATCTGCAA AGAGCGATCG AGATCGCCCC GACGTTTCTG
CCGCCGTACC CGATGATGAT CATGTACCAT AATACGGGTA TGTTCATGAG CCGGCCAGGC
ATCGATCACA CCGATGGGCG CGCCCAGGCC CTGGACCTGT CGCAGCGGTT GTTGTTTTTG
AACTCGAACT TTCCAAATGC ACATATCTCG ATGGGGTGGT GCCTGCTCTG GCGGCGAAAT
TTCGACGCGG CGGAGCGGTC AATCCGTCGC GCCATTGAAC TCGATCCGTA TGAGCCGCAC
AGGCTTAGCG TGATCGGAAC AGCGTTGGTC TATCTGGGAC ATCACGAGGA GGGCCAGCGC
TTCTACGACA AGGCGCAGGG GCGGATGCAG CACGATTTCG ATTTCCAGCG CACCGATTAT
GGGGAACTTC ACTTCTTCAA GACAGAGTAC GAACGGGCCC TGTCCTGGAT GGAAATCCCC
GAGGCCCGAA CCCCCTACAA AACGCTTTTC TTCCGGGCAG CCGCCAATGC GCAATTGTCA
CGCCGAACGG ATGCGCAGAA CGATATCGAC GCGTTCGTCG AGGATATCCG CCCACGATGG
GCGGGCAGGG ACCCCTTCAC GCCCGAGCGT GGGTTTCAAT GGTACGCGGA CATGTTGCCC
CTGCGGCTCG CCTCGGACCG TGCGACGCTT CGCGCAGCGA TGGGAAAGCT CGGGCTCGAC
GTCACCGTGC ACGAGCCATC GTGA
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| Protein sequence | MSQGPSGSFA ARFFGAFAVK DPLGNPVTPR GQKPAALLAY LLYNAGRDVP RDRLIDMFWN
DRGSKQGRDS LRQALHVLRS TIGEAGAVLM HIDRQSVHVV KAHLSSDLQQ KEDAPWELDG
EFLADLAPTA PVFEDWLTET RRAVRRHQVA AAEQALDRLD AEANPDAVLA CATAILSLDP
HHEPAARCAM ERYAVQGKRG HALRVFETLS EALKSDGFEV SPDTDNLLRA ISDNRFPIDK
PHPAPTPRPG ASGDARGLPV VWLDLSETRH DRDSWDFVSD FCDHLILRCV QMPEFNLLTV
EDVTDIEKYT VAVSSGTTQS GLRISLRLRA PDDHLLWSGR ADLPDQPDDD RVHLAVDKLV
MQMLPPLEAH VFASLGAQID TAYGYYLKAK RTFWTDPQFG YIDKVVADLQ RAIEIAPTFL
PPYPMMIMYH NTGMFMSRPG IDHTDGRAQA LDLSQRLLFL NSNFPNAHIS MGWCLLWRRN
FDAAERSIRR AIELDPYEPH RLSVIGTALV YLGHHEEGQR FYDKAQGRMQ HDFDFQRTDY
GELHFFKTEY ERALSWMEIP EARTPYKTLF FRAAANAQLS RRTDAQNDID AFVEDIRPRW
AGRDPFTPER GFQWYADMLP LRLASDRATL RAAMGKLGLD VTVHEPS
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