Gene Jann_2017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2017 
Symbol 
ID3934470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp2022068 
End bp2022463 
Gene Length396 bp 
Protein Length131 aa 
Translation table11 
GC content56% 
IMG OID637904373 
Producthypothetical protein 
Protein accessionYP_509959 
Protein GI89054508 
COG category[S] Function unknown 
COG ID[COG1981] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.196154 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTATG AATTGACCAA AACAGCGCAT CTTGTCTCAC TCTTCGTCTG GACCGGCGGC 
ATGGTCGCCG TTGGACTGGC GCTCAGGTAT CCGGCAGACG GCTTCCTGAA GCCGCTCAAA
ACCTATGACC GTGCCGTCAC AACACCCGCC ATGATCGCCG CTCTCCTGTT CGGCATTCTA
CTGGGCATTC AGGGCGGATG GTTCTCGTCC GGATGGCTTG GGATGAAGAT CATTCTGGTT
CTGGTTTTGT CCGGTCTTCA TGGCGCGCTG ATCGGCAGGT TGCGCAAAGC GATCTGGGAA
AGTCCGCGCG AGATCAAACC CGGAGGCAAG ATGTTCCTGC CCATTGGACT GGTTGTTCTG
ACGCTGATTG TCTTGCTTGT GACGATCAAA CCCTGA
 
Protein sequence
MLYELTKTAH LVSLFVWTGG MVAVGLALRY PADGFLKPLK TYDRAVTTPA MIAALLFGIL 
LGIQGGWFSS GWLGMKIILV LVLSGLHGAL IGRLRKAIWE SPREIKPGGK MFLPIGLVVL
TLIVLLVTIK P