| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1496 |
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| Symbol | |
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| ID | 3933943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1467158 |
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| End bp | 1467730 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637903846 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_509438 |
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| Protein GI | 89053987 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | [TIGR03384] transcriptional repressor BetI |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000100434 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCCCGCA CAGGTATGAT GGCTATACGG AAGGACGCGC TTGTCAACGC GACGATTGCC
GAGATCGGGC GGCGGGGGTC TCTGGACGTG ACCATGGGGC AGATCGCCAA GGCAGCGGGC
GTGTCTTCAG CGCTGGCGCA TCATTATTTC GGCTCCAAGG ACGATCTTTT GCTGGCGGCG
ATGCGGGCTA TCCTGGCGGA GTTCGGGACG GAAGCGCGCG CGCAACTGGC CCGCGCGACG
ACCCCGATGG AGCGGTTGGT GGCCATCACC CGTGCCTCTT TCGGCGGGCA GAATTTCCGG
CCCGAAGTCG TGGCGGCCTG GCTCACCTTC TACGTCATGG CGCAACGGGA CGATCAGGCC
GCACGGCTGT TGCGCGTTTA TCAGCACCGG CTGGTGTCCA ATCTGACCCA TGCGTTAAGG
CCGTTAACCA ATGACGCGCC GCGCATCGCC GCGACGGCCG CGGCGCTGAT CGACGGCCTC
TATATTCGCC ACGCTTTGGC CGACCTGGGC CCGCCAAACG CAGAGGCGGC CATTGCCCGC
GTCACCGATT ATCTGGAAGT CGCGATCCGA TGA
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| Protein sequence | MPRTGMMAIR KDALVNATIA EIGRRGSLDV TMGQIAKAAG VSSALAHHYF GSKDDLLLAA
MRAILAEFGT EARAQLARAT TPMERLVAIT RASFGGQNFR PEVVAAWLTF YVMAQRDDQA
ARLLRVYQHR LVSNLTHALR PLTNDAPRIA ATAAALIDGL YIRHALADLG PPNAEAAIAR
VTDYLEVAIR
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