| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1302 |
|---|
| Symbol | |
|---|
| ID | 3933749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 1260529 |
|---|
| End bp | 1261572 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637903652 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_509244 |
|---|
| Protein GI | 89053793 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00194364 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCTTG AACGGCGCTC CAACGTCCCA CTTTACCTTG TCATCATAGC CCCCATCGTC
GCGGTGGTGA TTGCCTTGAC CCTTGCCGCA GGCCTTATCG CGGCGGCGGG CGTGAACCCC
ATGACGGCTT ACGCTGAGAT GTTGCGCGGT GCGTTTGGGT CTCGCCTCTC CATCACGGAA
ACGCTGACCC GCGCGACGCC GTTGATCTTG ACCGGGCTGG CCGCCGCCAT CGCTTTCCGC
GCAAAGCTGT GGAACATCGG TGGCGAGGGG CAGTTTTTCA TGGGCGCACT GGTGGCCGCC
TGGGTCGGGC ATTCTCTTGG GCTGCCTCCT CTGCTCGGCA TCACGGTCCT TCTTGTCATT
GGCATGGCGG CGGGTGCCAT CCTTCTGGCG GGACCTGCCT ATTTGCGTCT GCGCTTCGGG
GTCGATGAAG TTGTCACGAC ACTGCTACTC AACTTTATCG TTATCTTGTT CGTCGGTCTG
ATGGTTGAGG GTCCCCTTCG TGATCCGATG GCGTTTGGCT GGCCCTCCTC GGTCCCGGTC
GATGGCGACT TCCGCCTTCC CGATCTTGTC GCGCGCACCC GCCTTCACAT CGGGTTCCTG
ATCGCCATTG CGGCTGCTGG CGTCGTTTGG CTTATCTTGT CGCGCACGGT TTTCGGGACA
GAAACGCGCG CGGTGGGTCT CAGTCCAGCG GCGGCGTCCT TTGCGGGGAT CTCACTTCCA
AAGAACCTGA TGGCCGTGGC CCTGTTTTCA GGCGCGATGG CTGGATTGGC GGGATCGATG
GAGGTCTTGG GCGTCACGGC GGTGGTCACG ACCACAATGT CGCCGGGCTT TGGCTATGCG
GGGATCGTTG TAGCAATGTT GGCGGCCCTC CACCCTGCAG GCGTTGTTGC CGCCGCCATC
TTCGTGGCCA CCGTTTTTGT GGGTGCAGAC GCAATGAGCC GCGCCACGGA CGTGCCCAGT
TTTATCGCGG ACGTCATCGT GGCGCTGTGC CTTCTGACCA TGCTGGTCGC ACTGCTCTTC
ACAACGTACC GGGTGCGAAA ATGA
|
|---|
| Protein sequence | MRLERRSNVP LYLVIIAPIV AVVIALTLAA GLIAAAGVNP MTAYAEMLRG AFGSRLSITE
TLTRATPLIL TGLAAAIAFR AKLWNIGGEG QFFMGALVAA WVGHSLGLPP LLGITVLLVI
GMAAGAILLA GPAYLRLRFG VDEVVTTLLL NFIVILFVGL MVEGPLRDPM AFGWPSSVPV
DGDFRLPDLV ARTRLHIGFL IAIAAAGVVW LILSRTVFGT ETRAVGLSPA AASFAGISLP
KNLMAVALFS GAMAGLAGSM EVLGVTAVVT TTMSPGFGYA GIVVAMLAAL HPAGVVAAAI
FVATVFVGAD AMSRATDVPS FIADVIVALC LLTMLVALLF TTYRVRK
|
|---|
| |