| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1237 |
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| Symbol | |
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| ID | 3933682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1192723 |
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| End bp | 1193526 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637903585 |
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| Product | transcription activator, effector binding |
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| Protein accession | YP_509179 |
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| Protein GI | 89053728 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG4978] Transcriptional regulator, effector-binding domain/component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.516302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.923656 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCCCC GCTTTTGCGG TCAGCTCTTC ACGTTGACGT CACCATTGCC CACACGCGGC
GCAGTCACCG GGTTGGGCCC GGGTCCATCT TTGGCCAGCG ATGATTTCGG CGTATCGGGA
TCGTCCAATC GATCCTCGGT CCGCTTCTTG CTCCACGCGG CCCAGGCGAG CCACGCGATC
ATGGTAAACA GGAACAGTCC TGCGAGAAAA CCCCAGGTTT CCATAGTGAT CTCCTTTCAT
ATGCTGGCCG GTCAACGCGC CACAACGGCA GCGGTTCCCA GACGCGCGTT TGGAGAACGG
CGCGCGCGGG ACTATGCTTG CGGCCCTGAA AGGAGTGCTG AGATGGAGTT CACCCGAAAA
ACCCTGCCTG CCCAACCCTA CATCTACGTC GAGCGCGAAT GCGCCTATGG CCCCGAAATT
GCCGATGCGA TGGGGTCTGC CTTCGGCGAG ATCTTCGCCT TTGTGGGTCA GTCCGGCATC
ACACCCCTGT CTATGCCGAT GTCCGTCTAC ACTGGGATGG ACCCAAAGAT CCTGCGGTTT
CGGGGCGGTG TGATCGTGTC GACGGATGAC GCCGCCAAAG CCGAAGGCGC GATCAAATCC
GACGCCTTGC CCGCCGGAGA TGTCATGCAT GTGATCCACA AGGGTCCCTA CGACACGATG
AACCTGACCC ACAAAGCGCT GTGGGAGCAT CTGGAAGCCC AGGGCACGCC CGGCACGATG
CCCACATGGG AGATTTACAC CGACGATCCC GGCGACACCG CCCCCGAGGA TCTGCGCACG
GAGATCTTCT GCACCATCGC CTGA
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| Protein sequence | MRPRFCGQLF TLTSPLPTRG AVTGLGPGPS LASDDFGVSG SSNRSSVRFL LHAAQASHAI
MVNRNSPARK PQVSIVISFH MLAGQRATTA AVPRRAFGER RARDYACGPE RSAEMEFTRK
TLPAQPYIYV ERECAYGPEI ADAMGSAFGE IFAFVGQSGI TPLSMPMSVY TGMDPKILRF
RGGVIVSTDD AAKAEGAIKS DALPAGDVMH VIHKGPYDTM NLTHKALWEH LEAQGTPGTM
PTWEIYTDDP GDTAPEDLRT EIFCTIA
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