| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0895 |
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| Symbol | |
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| ID | 3933339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 849123 |
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| End bp | 849806 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637903243 |
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| Product | rhomboid-like protein |
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| Protein accession | YP_508837 |
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| Protein GI | 89053386 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.402986 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCAGC AAAACGTGTC ACCCTTCAAC GCATTGCCGC CGGTGGTCAT CGCCCTGGCG
GTGGTGATTT TCGGGCTGGA GATCATGTTC CAACTCGCCA CGGCGGGGAT GCTGGGCGGG
CAGGGCGGCG TCGGCTGGCG GCTGGCGGCG ATGCAGGATT TCGCGGTTCT GAACGCGGTC
TGGGACTGGA TGATCGAGAC CGGCCAGTTC CCGACCGAGC ATCTGGTGCG GTTCATCGCG
TATCCGTTGA TCCACGGCAG CTTTATCCAC GCCGCGATGG TGGTGGTGTT CATCCTCGCC
TTGGGAAAAA TGGTGGCGGA GGTCTATTCG GTGCTGGCCT TCCTTGCCGT ATTCTGGGTC
TCGGCGATCA TGGGGGCCTT GGGGTTCGTG GTGATCCTCG ACAGTGAGAT GCCGTTGGTG
GGCGGCTATC CCGGTGTCTA CGGGCTGATC GGGGCGTTTA CCTTCCTGAT GTGGATGCGG
GCGGAGGCGC AGGGATCGGG GCAGATGCGC GCGTTCGGGC TGATCGGAGC ACTTTTGGCG
ATCCAGCTGC TGTTTGGCCT GCTGAACGGC GATTTCGGCA GTGTGGTCGC GGATTTCTCG
GGGTTTGCGA CGGGGTTGGC GCTGTCGTTC ATCGTCAGCC CGGGCGGCTG GCGGCGGATG
CTGTCGCGGA TGCGGCAACG CTGA
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| Protein sequence | MDQQNVSPFN ALPPVVIALA VVIFGLEIMF QLATAGMLGG QGGVGWRLAA MQDFAVLNAV
WDWMIETGQF PTEHLVRFIA YPLIHGSFIH AAMVVVFILA LGKMVAEVYS VLAFLAVFWV
SAIMGALGFV VILDSEMPLV GGYPGVYGLI GAFTFLMWMR AEAQGSGQMR AFGLIGALLA
IQLLFGLLNG DFGSVVADFS GFATGLALSF IVSPGGWRRM LSRMRQR
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