| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0038 |
|---|
| Symbol | infB |
|---|
| ID | 3932474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 35188 |
|---|
| End bp | 37662 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637902379 |
|---|
| Product | translation initiation factor IF-2 |
|---|
| Protein accession | YP_507980 |
|---|
| Protein GI | 89052529 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.963114 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATC AAGACGGAAA AAAACCACTT GGCCTTTCTG GTGGGGCGCG GTCAGGCCGC
GTGAACCAAA GCTTTTCTCG TGGACGCACC AAATCTGTGG TGGTCGAGAC GAAGCGCAAG
CGCGTTATGG TGCCCAAGCC CGGTGCGCCC TCTGCTGCTG CGCAAAATGC CGAAGGTGGC
AAGCGCGACA AGTCGGTTCC AGACGCGGAG ATGGATCGGC GCCTGAAGGC GTTGCAGGCC
GCCAAGGCGC GTGAGAGCCA GGAAGCGGAA GAGCGTGTGA AAGCCGAGCG CGAGCGCGAG
GAAGAGCGCA ATCGCCGCCG GGCCGACGCT GAGGCCAAAG AGCGGGAAGA GCGTGAGCGC
GAAGAGGCGC TGAAGGCCAA GGAAGAAGAA GACGACCGCC GTAAGGCCGA GGAAGAAGCC
CGCCGCAACG CGCCACCGGA AGCCGCTGCG CCCGCCGTGG ATCCTGCCGC AGCTGCCACC
CCCCGCGGTG GCGGCAAGGC AGCCCCCGCG CGCCGCGAGC CCGAGCGGGA CAACAAGCGC
GAGAATCGGA GCCGTGGCAA CGATGGCGGT GGCCGTCGCG CAGGCAAATT GACGGTCAAT
CAGGCGATGT CCGGCGGCGA AGGTGGGCGT CAGCGCTCCA TGGCTGCCAT GAAGCGGAAG
CAGGAACGCC AGCGCCAGAA GGCGATGGGT GGCTCCGTTG ATCGTGAAAA GGTCATCCGC
GACGTGAAGG TGCCCGAGAC GATTATCGTG GCCGAACTTG CCAACCGGAT GTCCGAGCGC
GTCGGTGATG TCGTGAAGGC GTTGATGAAC AACGGCATGA TGATCACGCA GAACCAGCCG
ATTGATGCGG ATACGGCTGA ACTGATCATC GAAGAGTTCG GCCACCGCGT GCAGCGCGTG
TCCGACGCGG ATGTTGAGCA GGTGATCGAC ACGGTCGAAG ACGATGAAGG CAAACTGCTG
CCCCGGCCCC CGGTCATCAC GATCATGGGT CACGTCGACC ACGGCAAAAC GTCGCTTCTG
GATCGCATCC GTCAGGCCAA TGTGGTCTCG GGTGAGGCGG GCGGTATCAC GCAGCACATC
GGTGCCTATC AGGTGACAAC CGAAAGTGGT GCGGTTCTGT CCTTCCTCGA CACGCCCGGC
CACGCCGCGT TCACGTCCAT GCGGGCCCGC GGCGCGCAGG TCACGGACAT CGTGGTTCTG
GTGGTGGCGG CTGATGACGC CGTCATGCCC CAGACGATTG AGGCGATTGC CCATGCGAAA
GCGGCTGAGG TGCCGATGAT CGTGGCGATC AACAAGATCG ACCGTCCCGC TGCCGATCCG
CAAAAGGTCC GCACAGATCT GTTGCAGCAT GAGGTGATCG TGGAAGCGAT GTCCGGCGAA
GTGCAGGACG TCGAAGTCTC TGCGATGACC GGTCAGGGTT TGCCCGAGCT GCTGGAAGCC
ATCGCACTGC AAGCGGAACT GTTGGAGCTG AAAGCCAACC CAGACCGTGC CGCCCAGGGT
GCCGTGATCG AGGCACAGCT TGATGTGGGA CGCGGTCCTG TCGCCACCGT TCTGGTGGAA
AAAGGCACGC TGCGCCAAGG CGATATCTTC GTCGTGGGGG AGCAGTGGGG TAAGGTCCGC
GCGCTGGTCA ACGACCAGGG CGACCGCGTG AAGGATGCCG GTCCGTCGGT GCCTGTCGAG
GTGCTTGGTC TGAACGGCAC GCCCGAAGCC GGTGACGTCC TCAACGTGGT GGAAACCGAA
GCCCAGGCCC GTGAGATCGC GGAGTATCGC GAGCAAGCCG CCAAGGACAA ACGCGCCGCC
GCCGGTGCCG CCACAACCCT CGATCAGCTT CTGGCGAATG CCAAAGCCGA TGAGAACGTG
CGCGAGTTGC AGGTGGTGAT GAAAGCCGAC GTGCAGGGCT CTGCCGAGGC GATCGTTCAG
GCGCTGGAGA AGATCGGCAA CGATGAGGTG CGCGTTCGCG TGCTGCACTA CGGTGTTGGC
GCGATCACGG AGAGCGATAT CGGTTTGGCT GAGGCTTCAG GCACGCCGGT AATCGGCTTC
AACGTCCGGG CCAACGCGCC TGCGCGGAAT GCCGCGAACC AGAAGGGCGT GGAGATCCGG
TATTATTCGG TGATCTATGA TCTTGTGGAC GACGTGAAAG CTGCCGCCTC CGGTCTGCTG
GGGGCCGAGA TCCGCGAGAA CTTCATCGGA TATGCCAACA TCAAAGAGGT CTTCAAGGTC
TCGGGCGTGG GCAACGTCGC CGGTTGTCTC GTCACCGAAG GTGTGGCGCG CCGCTCTGCC
GGTGTGCGCC TGCTGCGCGA CGATGTTGTG ATCCATGAAG GCACGCTGAA GACGCTCAAG
CGCTTCAAGG ACGAGGTCAA GGAAGTCCAG TCCGGTCAGG AATGTGGTAT GGCGTTCGAG
AATTACGAAG ATATCCGCCC TGACGATGTC ATCGAGATCT TCGAGCGGGA AGAGGTTGAG
CGGTCGCTCA CCTGA
|
|---|
| Protein sequence | MSDQDGKKPL GLSGGARSGR VNQSFSRGRT KSVVVETKRK RVMVPKPGAP SAAAQNAEGG
KRDKSVPDAE MDRRLKALQA AKARESQEAE ERVKAERERE EERNRRRADA EAKEREERER
EEALKAKEEE DDRRKAEEEA RRNAPPEAAA PAVDPAAAAT PRGGGKAAPA RREPERDNKR
ENRSRGNDGG GRRAGKLTVN QAMSGGEGGR QRSMAAMKRK QERQRQKAMG GSVDREKVIR
DVKVPETIIV AELANRMSER VGDVVKALMN NGMMITQNQP IDADTAELII EEFGHRVQRV
SDADVEQVID TVEDDEGKLL PRPPVITIMG HVDHGKTSLL DRIRQANVVS GEAGGITQHI
GAYQVTTESG AVLSFLDTPG HAAFTSMRAR GAQVTDIVVL VVAADDAVMP QTIEAIAHAK
AAEVPMIVAI NKIDRPAADP QKVRTDLLQH EVIVEAMSGE VQDVEVSAMT GQGLPELLEA
IALQAELLEL KANPDRAAQG AVIEAQLDVG RGPVATVLVE KGTLRQGDIF VVGEQWGKVR
ALVNDQGDRV KDAGPSVPVE VLGLNGTPEA GDVLNVVETE AQAREIAEYR EQAAKDKRAA
AGAATTLDQL LANAKADENV RELQVVMKAD VQGSAEAIVQ ALEKIGNDEV RVRVLHYGVG
AITESDIGLA EASGTPVIGF NVRANAPARN AANQKGVEIR YYSVIYDLVD DVKAAASGLL
GAEIRENFIG YANIKEVFKV SGVGNVAGCL VTEGVARRSA GVRLLRDDVV IHEGTLKTLK
RFKDEVKEVQ SGQECGMAFE NYEDIRPDDV IEIFEREEVE RSLT
|
|---|
| |