| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4268 |
|---|
| Symbol | |
|---|
| ID | 3932420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007801 |
|---|
| Strand | - |
|---|
| Start bp | 62318 |
|---|
| End bp | 63904 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637902325 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_512208 |
|---|
| Protein GI | 89057754 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.3626 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCATTG ATGGCCGATC GAGTAACCAC ACTGGTGCTC TGGATTACGA TGTTCTAATT
GTGGGAGCGG GACCGGCCGG AATAACCCTC GCACTGGAGC TGAGTGGCCA AGGGTTGCAA
ATCGGTTTGC TGGAAAGTGG CGGGCTCGGG TTCGATCCAG ACACCCAGAT GCTCTATGAT
GGACCGGTAA CGGGCAACAG TGACGGTGTG GATCTTTCCG CTATCCGTCT GCGGTTCTTC
GGCGGTTCCA CCAATCATTG GGGTGGGCGC TGCGTACCCC TTGATCCGAT TGATTTCGCG
CGGCGCCCCC TGACTGGTCT GTCCGGTTGG CCCATCACCT ACGAAGAGAT GGGCAACTTC
TATACACGCG CCCATCCTTA CTTGGGCATC GGTCGGAACG AATATGATCC ACTGGCCATC
GAGGGTGTGG ACCGGGATGA TCTGCTTCTG CCCGATAGTG ACATTCTGCG AACGGTCACG
ATCCGCCAAA GCGACTGGCA ATTCGGTCTG GAATACGAAA CGGCTCTTGC CGAGGCCACC
GATATTGATC TGTGGCTGTG GACCAATGTG ACCGGGCTCG ACATGGATGA CGACGGGGTT
GTGCGCAGTG TTACGACACG CACACTTGAC CGCGTCGCCC GGCAATTCTC GGCACGCTAT
GTGGTTCTGG CGTGTGGTGC CGTAGAAAAT GCGCGTCAAA TTCTAGACCT GAATGCCTCC
ACCGGCGCCC GTTTTGGCGA TACCGGGGGG TTTGTGGGGC AATGTTACAT GGATCATCCC
ACCGCAGGGG CGGGTTTCCT ATGGCCTGAA CAGCCATTGG AGCCACAACT CTACTGGACC
CACACCAACG ACGTGGACGG CACACAGATT CGATTGCTTT GGGCACTACA AGAAAACGTG
ATGGAGCGCG AGAACCTCAG CAACATGCAA TTCTACCTCA TCCCAATGGA CCCCGAACAA
GACCCGCGCA ACACGGCCGC CACCGAAGGC TGGTGGGCCC TGCGCAATAT CGCGAAAATG
GCACTTGGAC GGGATACCGG GCGGATTACC TTCTCGGATG CCTATTGCTC TGCGATCACC
AATGCCGATG TCATGGCGGC CGACGCTCTG GGACTTATCG GGACAGGTGA ACTTGCTCAG
CGTGTTTTGT TGAAATTCGA GACCGAACAA AGTCCCGAGC GCAACAATGC CGTCACCCTC
ACCAATGACC GAGACGCCTT GGGCCTAAGA CGCGCCGCCT TGAATTGGGC CCCATCGGTA
CGGGACCGCG ATGCAGTCCT ACGAACCACA GAACTGATTG GCCAAGCGGT AGGTGCCGCT
GGTTTTGGTC GAATCGAACT GGAAGATCAC TTCGAAGAAC CATATTGGGG CACGACAACA
TCGTGGCACC AAATTGGTAC AACCCGCATG GCGATGAATC CAGACGACGG TGTCGTTGAT
CCCGATTGCC GACTCCATGG GTCCGACAAT CTCTATCTGG CGGGAGGGAG CGTCATGCCG
ACCGGAGGAC GTGCCAATCC CACATTGACG ATCGTGGCTC TCTCCCTACG TCTAGCCGAC
CACCTGAAAC AGAGGATAGC CTCATGA
|
|---|
| Protein sequence | MIIDGRSSNH TGALDYDVLI VGAGPAGITL ALELSGQGLQ IGLLESGGLG FDPDTQMLYD
GPVTGNSDGV DLSAIRLRFF GGSTNHWGGR CVPLDPIDFA RRPLTGLSGW PITYEEMGNF
YTRAHPYLGI GRNEYDPLAI EGVDRDDLLL PDSDILRTVT IRQSDWQFGL EYETALAEAT
DIDLWLWTNV TGLDMDDDGV VRSVTTRTLD RVARQFSARY VVLACGAVEN ARQILDLNAS
TGARFGDTGG FVGQCYMDHP TAGAGFLWPE QPLEPQLYWT HTNDVDGTQI RLLWALQENV
MERENLSNMQ FYLIPMDPEQ DPRNTAATEG WWALRNIAKM ALGRDTGRIT FSDAYCSAIT
NADVMAADAL GLIGTGELAQ RVLLKFETEQ SPERNNAVTL TNDRDALGLR RAALNWAPSV
RDRDAVLRTT ELIGQAVGAA GFGRIELEDH FEEPYWGTTT SWHQIGTTRM AMNPDDGVVD
PDCRLHGSDN LYLAGGSVMP TGGRANPTLT IVALSLRLAD HLKQRIAS
|
|---|
| |